Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g4093 ATGTGTTCCTGTCGTGAGAAGGAGATTAAATTTCTTGTTCGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTTAAAACTGTTTTACCTGCCTTGGCTCAAGCTGTTGTTATGAATTCTTTCCCTACAGTACAACAAGAAGGAACTGCAGAGAATTTGAAGGAGAAGTTTCAGGTCCTTTCTGTGGAAATTGTTGAAGCATATAACATAATTCCGAATTTGGATCTCATAGTTCCATCTCTCATGAACAAAGGAATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCTGGAATTCCTATTAAGCCTATGCTTGCAACGATCACCAATGGCATTCCCAAGGCATTGAACCTATTTCAAAATAAGGCATTTACTTGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAATTGATGGATCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACATCAAGATTTCCTGATCTTATTGACATAATTAAGGAATCCTGCAAGCCTGTTGCTTCGACTTTCATAATTGATGCTGAAGTTGTTGGTATTGATAGAAAAAATGGATTTAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGTAAAGGAAGCAAAGATACTCTAGTTACTACAGAGAGCATAAAGATTGAAGCAGACAAGGCTTGCGAAACTTGTAAAGACACATTAACCAAGATAAACGCTTTCTTGGAAGATGCTCTTCGTTCTTCCTGTGAAGGAATTATGGTGAAAACATTGGATGTAGATGCTGGTTATTCTCCGTCAAAGCGTTCTGATAAATGGTTAAAGGTCAAACGAGATTATGTCGATGGTTTAAATGATACTCTTGATTTGGTGCCAATTGGAGCTTGGCATGGAAATGGAAGGAAGGCCGGATGGTATAGTCCATTTCTCATGGCATGTTATAATCCTGAAACTGAGGAATATCAAAGCGTGTGCCGAGTGATGTCTGGGTTCTCAGATTCGTTTTACATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTCTTATCCAAAAAGCCGCTGTATTATCGAACAGCAGAGAAGCCCGACATGTGGTTTTGTCCGCAACTTGTTTGGGAGATACGAGGTGCAGAGTTCACGGTGTCCCCTGTTCATCATGCAGCCATCGGTTTAATTCATCTGTCTCGGGGCATCTCAATACGGTTTCCGAGATTTATTAGGCGTGTGTCGGATAGGAACCCAGAAGAGTGTAGTACAGCAGCAGATATTGTTAATTTGTTTCATTCTCAGCCAAGGAAGAAGGATGTCACAGCTGAAGATTGA 1317 0.4009 MCSCREKEIKFLVRTLVRNLRIGAMLKTVLPALAQAVVMNSFPTVQQEGTAENLKEKFQVLSVEIVEAYNIIPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLATITNGIPKALNLFQNKAFTCEYKYDGQRAQIHRLIDGSIRVFSRNGDESTSRFPDLIDIIKESCKPVASTFIIDAEVVGIDRKNGFRIMSFQELSSRGKGSKDTLVTTESIKIEADKACETCKDTLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVDGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPLYYRTAEKPDMWFCPQLVWEIRGAEFTVSPVHHAAIGLIHLSRGISIRFPRFIRRVSDRNPEECSTAADIVNLFHSQPRKKDVTAED* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g4093 438 ProSiteProfiles ATP-dependent DNA ligase family profile. 231 313 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo14g4093 438 CDD Adenylation_DNA_ligase_I_Euk 95 278 - -
Amo14g4093 438 Gene3D DNA ligase/mRNA capping enzyme 218 274 - -
Amo14g4093 438 Gene3D - 278 437 IPR012340 -
Amo14g4093 438 Pfam ATP dependent DNA ligase domain 104 211 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo14g4093 438 Pfam ATP dependent DNA ligase domain 230 275 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo14g4093 438 PANTHER DNA LIGASE 3 214 434 - -
Amo14g4093 438 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 214 434 - -
Amo14g4093 438 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 128 136 IPR016059 GO:0003909
Amo14g4093 438 SUPERFAMILY Nucleic acid-binding proteins 284 428 IPR012340 -
Amo14g4093 438 CDD OBF_DNA_ligase_I 284 427 - -
Amo14g4093 438 Gene3D - 1 103 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g4093 438 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 59 277 - -
Amo14g4093 438 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 213 - -
Amo14g4093 438 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 2 87 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g4093 438 Gene3D DNA ligase/mRNA capping enzyme 104 217 - -
Amo14g4093 438 PANTHER DNA LIGASE 3 1 213 - -
Amo14g4093 438 Pfam ATP dependent DNA ligase C terminal region 301 409 IPR012309 GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g4093 Amo-Chr14 146765666 146769633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g4093 11 428 Core DNA Replication Machinery Family AT1G08130 37.004 1.37e-106 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g4093 - - aip:107635689 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g4093 14 146765666 146769633 Amo14g4093 14 146765666 146769633 ECH