Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g4048 ATGGCCGCTGGTATGGATATGTCCCTTGACGAAGTCATCAAGAAGTCCGCGGCTGAGTCCGCCGCTCGCCGCCGCCCAAGGTATCCTCTCTCAGGCCTTGGTCCCGACCGCCGCATCCCTAATCGTGTCTCCGCCACAATGACGCCCTACCCCGTCCCGCAGGTTGGAAGGCAAATGTTGCAAGGGAGTGTTGTTCCTGGTGTTGGACTGGTTATGGGTCACGGAGCTGGAGTTGGAGCTGAACCTGACACTGAAACCAAACTCTATATTTCTAACTTGGATTATGGTGTTTCCAACGAAGATATTAAGCTGCTGTTTGCAGAAGAGGGCGAGTTAAAGAGATACTCCATACATTATGACAAGAGTGGAAGATCAAAGGGGACAGCAGAAGTTGTCTTTGTGAGGAAGTCTGATGCTCTAGCAGCCATGAAGAAATACAACAACATGAAGCTTGATGGGAAACCATTGCAAATTGAGCTTGTTGGAACTACCGTCGTACCAGCTCCTGATGTTAGACCTGTTGTTCAAAATAGCATATTGGGAAAACCAAGTAACTTCTTTGTATGTGGACAAGGAACGGTCGACGATAGAAGTTTCCAGAATGGCATTTTAGGGGACTACCATCGAACAATCCAGAATGGCATTTTAGGCGACTACCATCGAAGGGGCCTTAGTGACAGGATTGGAGGGAAGATCCCTATTGGAAGGAGGGTGTCTTCTAGAGATCTTGATGATGATTTGGAGAGGTATAACCAACGTCCAAGAGGTGGTCCAAGAAGCAGAGGCCGCAGAGAAACAAGGGACCAAAATAATGGAAAGCTATCTCGTAAAGATCTTGATGACGACTTGGAGCGGTATCGCATGGAGGCTATGCAACTAAAAAAGAAAAATCCAAACTGA 900 0.4767 MAAGMDMSLDEVIKKSAAESAARRRPRYPLSGLGPDRRIPNRVSATMTPYPVPQVGRQMLQGSVVPGVGLVMGHGAGVGAEPDTETKLYISNLDYGVSNEDIKLLFAEEGELKRYSIHYDKSGRSKGTAEVVFVRKSDALAAMKKYNNMKLDGKPLQIELVGTTVVPAPDVRPVVQNSILGKPSNFFVCGQGTVDDRSFQNGILGDYHRTIQNGILGDYHRRGLSDRIGGKIPIGRRVSSRDLDDDLERYNQRPRGGPRSRGRRETRDQNNGKLSRKDLDDDLERYRMEAMQLKKKNPN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g4048 299 Coils Coil 276 296 - -
Amo14g4048 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Amo14g4048 299 MobiDBLite consensus disorder prediction 239 283 - -
Amo14g4048 299 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 251 - -
Amo14g4048 299 Gene3D - 79 162 IPR012677 -
Amo14g4048 299 PANTHER THO COMPLEX SUBUNIT 4A-LIKE ISOFORM X1 1 251 - -
Amo14g4048 299 MobiDBLite consensus disorder prediction 18 42 - -
Amo14g4048 299 CDD RRM_THOC4 86 160 - -
Amo14g4048 299 SMART rrm1_1 87 159 IPR000504 GO:0003723
Amo14g4048 299 SUPERFAMILY RNA-binding domain, RBD 79 161 IPR035979 GO:0003676
Amo14g4048 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g4048 Amo-Chr14 146382564 146385131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g4048 88 161 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 1.42e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g4048 K12881 - gmx:100785926 214.927