Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3978 ATGGATCCAAGAAGGCATGGGAAGCTACCATTATCTTCATCATCAGATGCAAAAGAGAAGAGAGAGGATGATGATTATGGATCTTCTTGGTGCACACCTGAAGACACTGACATGTCAACCATGGTTTCAGCTCTTGCTCAAGTTATGGCAACTTCCAATAATAATAATAATCAAAACCCTCATCACATGATGATGATGCCACAATCAAACCCTTTTCCTCTCTCAAATGAACCTCTTCAACCTACTCACCCTCTTCAAGATCAAGAGGAGGGGTCAAATAAGAAGAAGCCACACTACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCAGAAATTAGAGATCCAAACAAAGCAGCAAGAGTCTGGCTTGGAACCTTTGACACTGCTGAAGATGCTGCTTTAGCTTATGACAAAGCTGCTCTCAAATTCAAAGGCAACAAAGCCAAGCTCAATTTCCCTCAAAAACTTGTTCAACCAAACACTACTCAACAACAACAACCTAATAACAACAACATGCTACAACAACAACAACTACAAGGTGGTTCTGCCTTTCAATTCAGTGGTTCAGCTTCTAATGCTATTCTTCCTGCACTCTATTCACCATCATCATCATTATCCTCAACACATGATCATCAAGTTTTCCCAAACTTGTTTCAGTATGCACAGATTCTTTCAAGTGATGAAGCAAATTTTCCTTATTACACTTCACATCTTTTCAATCAACAACAGCAACAGCAGCAGCAACAATTGCAACAATCTTTGAATCCATCGTCCTATTTCTACAACCAACAACAACAACATGATCATGAAGGAGGACACCATCACCACCAAGATCAGTAG 846 0.4066 MDPRRHGKLPLSSSSDAKEKREDDDYGSSWCTPEDTDMSTMVSALAQVMATSNNNNNQNPHHMMMMPQSNPFPLSNEPLQPTHPLQDQEEGSNKKKPHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEDAALAYDKAALKFKGNKAKLNFPQKLVQPNTTQQQQPNNNNMLQQQQLQGGSAFQFSGSASNAILPALYSPSSSLSSTHDHQVFPNLFQYAQILSSDEANFPYYTSHLFNQQQQQQQQQLQQSLNPSSYFYNQQQQHDHEGGHHHHQDQ* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3978 281 MobiDBLite consensus disorder prediction 1 35 - -
Amo14g3978 281 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Amo14g3978 281 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Amo14g3978 281 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Amo14g3978 281 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Amo14g3978 281 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Amo14g3978 281 MobiDBLite consensus disorder prediction 1 28 - -
Amo14g3978 281 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Amo14g3978 281 Pfam AP2 domain 97 147 IPR001471 GO:0003700|GO:0006355
Amo14g3978 281 PANTHER DNA-BINDING DOMAIN 50 272 IPR044808 GO:0003700|GO:0009873
Amo14g3978 281 MobiDBLite consensus disorder prediction 52 104 - -
Amo14g3978 281 MobiDBLite consensus disorder prediction 52 87 - -
Amo14g3978 281 Gene3D AP2/ERF domain 98 157 IPR036955 GO:0003700|GO:0006355
Amo14g3978 281 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 50 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3978 Amo-Chr14 145712692 145717038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3978 37 158 AP2-EREBP Transcription Factor Family AT5G61890 56.250 5.67e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo14g3978 AP2 4e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3978 - - gmx:100796624 221.476