Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3968 ATGGAAAAGAAGAATCAGAATGACAAGAGCAAGAGTATTCACGACATCCTCCCTCTTGACCTGATTCACATAATCCTTTTGCGGGTGCCGATCAGACATCTCGCTCGCCTCAGGTGTGTTTCCAAGCTCTGGTGCTCTCTCATTTCTGATCCTGACTTTGTGGAATTGCATTTTCACCACTCTCCGGCTGCCACCAACGCATGCTTTTTCATGAAAACCGACATTGTGGCTGACTTGGTTTACATAGACGACAATGATGCATCACAAAAAGAGGTGTGTCCCCCTTTCCAGAAGAAACCACCTTCTTATTTTGTGGTCGTGGGATCCTGCAGAGGCTTTATTCTCTTACATCGACACCCACATTTTCTTGTGGTATGGAACCCACTCACTGGATCCAGCAAAAGAATATCCTACTCTCATATTGTTCATCGTAGTAAACCCCCTGGCTATGGCAGGATTGCCTACCGTGTGTATCTGCATGGATTTGGTTATGATGCATCACAGGATGATTACTTACTTCTTGTAGCTTGGAGCGATTGCAAAGGACAATATCATTTGTATTGCTTTTCCTTGAGAACCAATTCATGGATTAATATTGATGCTGCAGTCCCCAATCGCTTGGGTTTTCTTTGCTGGCATTCTGGTGGGTTGTTCTTTAATGGCGCTGTTCATTGGGTGCCTTTCGATCTTAGAGATTACAGGGATGCTATTATTATCTTTGATCTCATGGAAATGACTTTTTCAACTATATCTGCGCCGGAACAACTGTCAAGCTCCTATACAAGTCTTGCCCTACTCGGAGGCTGCCTATCCTTGTATTCTTGCAAGGATGATTGCTATAACACTGACATATGGGTGATGAAAGAATATAAAGTGCACTCATCTTGGACTCTCTATCAGATTCCTTGCAAGTACTTCCGGCCTCTGTGCTTATCTAGTAATAAGGATATTATTGGAAGAGGTTATACTTCATGTGGTAAAACAGGGTACTTCATATATAATGTGAGAGGAGACCTGCTCAAGCATTTTAAAGATCTGTGTTGTCAGCATCCCAGACGTAAACCCATTATTGTGTATACAGAGAGTCTCTTGCCACTCCCTAGTGTCATTAAGGATAAGGATAACAAGAACAAGATGAAGAAGGAAATCCGAAAATTGATCATCATTGGCAACAACTGCCTGCCATTGAAGAAGTCAGAGATTGAATACTATGCTATGTTGGCCAAAGGAACCGAAAAGAGGGGGAAAAAAACGCGGGAAAATGCTCGTCTTTTTAAACGGATTGATGGAATGGGCATATGA 1302 0.4255 MEKKNQNDKSKSIHDILPLDLIHIILLRVPIRHLARLRCVSKLWCSLISDPDFVELHFHHSPAATNACFFMKTDIVADLVYIDDNDASQKEVCPPFQKKPPSYFVVVGSCRGFILLHRHPHFLVVWNPLTGSSKRISYSHIVHRSKPPGYGRIAYRVYLHGFGYDASQDDYLLLVAWSDCKGQYHLYCFSLRTNSWINIDAAVPNRLGFLCWHSGGLFFNGAVHWVPFDLRDYRDAIIIFDLMEMTFSTISAPEQLSSSYTSLALLGGCLSLYSCKDDCYNTDIWVMKEYKVHSSWTLYQIPCKYFRPLCLSSNKDIIGRGYTSCGKTGYFIYNVRGDLLKHFKDLCCQHPRRKPIIVYTESLLPLPSVIKDKDNKNKMKKEIRKLIIIGNNCLPLKKSEIEYYAMLAKGTEKRGKKTRENARLFKRIDGMGI* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3968 433 PANTHER OS02G0783600 PROTEIN 15 366 - -
Amo14g3968 433 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN 15 366 - -
Amo14g3968 433 Pfam F-box domain 17 53 IPR001810 GO:0005515
Amo14g3968 433 SUPERFAMILY F-box domain 13 119 IPR036047 GO:0005515
Amo14g3968 433 Pfam F-box associated 216 298 IPR006527 -
Amo14g3968 433 Gene3D - 368 418 IPR029064 -
Amo14g3968 433 TIGRFAM F_box_assoc_1: F-box protein interaction domain 108 301 IPR017451 -
Amo14g3968 433 Gene3D - 1 89 - -
Amo14g3968 433 SMART fbox_2 17 57 IPR001810 GO:0005515
Amo14g3968 433 SUPERFAMILY Galactose oxidase, central domain 105 338 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3968 Amo-Chr14 145582849 145587240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3968 385 409 Cytoplasmic Ribosomal Protein Gene Family AT1G36240 76.000 6.74e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3968 - - adu:107486475 584.719