Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3953 ATGGCAGATCATGATGCAGAATCTTCCTCCTCACATTTCATATATGATGTTTTTCTGAGCTTTAGAGGCTTCGCCCGATACAGATTCACAGATTGCCTCTATCATGCTTTGTGTGAGAGAGGAATCACCACCTTCAGAGATGATGAGAACCTCAGAGTTGGTGATAGAATCAGATATACTCTTCTTGAAGCCCTTGAAAGATCCAGGATGTCTATTGCTGTGCTGTGTAAGGACTATGCTTCTTCCACATGGTGTTTGGATGAACTAGCACAGATCATGAAGTCCTGGAATAATGGAAAATTTCGACCAGTTTTGCCAATATTTTATCAAGTGGAACCATCAGATGTGAGGCGCCAGAGGAACCAATATGAAAAAGACATGATGAAGCATGAAGACAGATATGGCAAAGACTCCCATGATATAAAAGCATGGAGGTCGGCTTTGCGTGAAGTGGCCAATCTAAGTGGAGTGACTTGTACAGTGAAGAGCTATGAAAGTGAGATTATCAACAAAATTGTTCAAGAGGTCTCGGAGAAGCTTCCTCCTGAACCACTATACATTAAGCATCCAATTGGTTTTGATTCTCACTTTGAAGCAGTGGAATCACTTTGGAATATTGAATCTGACAATACCATTTGCATGCTGGTCATGTATGGAGATGGTAACAAGACCACATTTGTTGGAGAGTTGTTTAACAAGTTCAGGCATCAATTTGAAGCTGCGAGTTTTCTTCATAAAGTCTCTGAAAAATCAAGGAGGAGTGCTGATGACCTAGAAAATCTCCAAGAAACACTTTTGCATGAAATGGGTGTGCATAAAAAACCTAAGCTGGGAAGCATGTTAAAAGGATCTTCTATTATAAAACAAAGTTTGCATAATAAAAGAGTCTTTCTAGTTCTTGATGATGTTGATAGTATAGAACAGTTGGATTCATTGGCAGGAGGAGGTGATTGGTTTTGTCCTGGTAGTAGAATTGTTATAACAACAAGAGATGCCAAATTCCTAAATAATCAAGTGTTAGATGGATTCAAGATTGAGAAATATTGCATTAATGAAGGTGAATTCGAAGGAATGCAAGGTGCTAGATCAAATCAGAAGAAAGATAAGGTCTTCGAGGAAGATATGGTGGGCTTTGTGGATATCTTCAACAATGTAACCAAGCAGTTGAAGGAAAATGAGACCAATCTTAATGTTATCTCGGTAATAGGCATGGGTGGTTTGGGTAAGACTACCCTTATTAAAAAAATTTACAACAATAATGAGGTGAAGAAGTTGTTCTCTTATTGTGTGTGGATTACCGTTTCTAAGGACTACAAAGCCACTGAGCTTCTTCAAATCCTTCTGAAAGGTTGCGGGTTGTTTGAGTCTACTAAAGGCAAAGACATAAGCAAGGATGATCAAAAGAGCAAGGTCCAAAAGTTCTTAGAGAAGAAGAAGTATTTGATAGTGCTTGACGACATATGGGAGCCTGAAGTTTGGGCTGAGGTAGAATGCTTATTTCCGGATAACAATAATGGCAGTGCAATATTGATAACACATAAAAAAATCAAATAA 1554 0.3855 MADHDAESSSSHFIYDVFLSFRGFARYRFTDCLYHALCERGITTFRDDENLRVGDRIRYTLLEALERSRMSIAVLCKDYASSTWCLDELAQIMKSWNNGKFRPVLPIFYQVEPSDVRRQRNQYEKDMMKHEDRYGKDSHDIKAWRSALREVANLSGVTCTVKSYESEIINKIVQEVSEKLPPEPLYIKHPIGFDSHFEAVESLWNIESDNTICMLVMYGDGNKTTFVGELFNKFRHQFEAASFLHKVSEKSRRSADDLENLQETLLHEMGVHKKPKLGSMLKGSSIIKQSLHNKRVFLVLDDVDSIEQLDSLAGGGDWFCPGSRIVITTRDAKFLNNQVLDGFKIEKYCINEGEFEGMQGARSNQKKDKVFEEDMVGFVDIFNNVTKQLKENETNLNVISVIGMGGLGKTTLIKKIYNNNEVKKLFSYCVWITVSKDYKATELLQILLKGCGLFESTKGKDISKDDQKSKVQKFLEKKKYLIVLDDIWEPEVWAEVECLFPDNNNGSAILITHKKIK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3953 517 ProSiteProfiles TIR domain profile. 13 180 IPR000157 GO:0007165
Amo14g3953 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 342 IPR027417 -
Amo14g3953 517 Pfam TIR domain 15 183 IPR000157 GO:0007165
Amo14g3953 517 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 156 IPR035897 -
Amo14g3953 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 512 IPR027417 -
Amo14g3953 517 Gene3D - 178 341 IPR027417 -
Amo14g3953 517 SMART till_3 14 154 IPR000157 GO:0007165
Amo14g3953 517 Pfam NB-ARC domain 383 513 IPR002182 GO:0043531
Amo14g3953 517 Pfam NB-ARC domain 214 338 IPR002182 GO:0043531
Amo14g3953 517 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 345 IPR044974 GO:0006952
Amo14g3953 517 Gene3D - 14 177 IPR035897 -
Amo14g3953 517 Gene3D - 362 516 IPR027417 -
Amo14g3953 517 PRINTS Disease resistance protein signature 398 413 - -
Amo14g3953 517 PRINTS Disease resistance protein signature 474 488 - -
Amo14g3953 517 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3953 Amo-Chr14 145394193 145396243 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3953 10 333 WRKY Transcription Factor Family AT4G12020 30.120 3.10e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3953 - - aip:107635555 1050.43