Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3890 ATGTTGGACGAAGATACCAACACCAACACCACCTCCTGGGCGCCGCGCGTGTGCGACACCTGCCGCTCTGCCCCATGTGCGGTCTTCTGCCGCGCTGACTCCGCATACCTCTGCGCGTCATGCGACGCGCGCGTGCACGCCGCCAACACCTTGGCCTCACGCCACGAGCGCGTGTGGGTATGCGAGGCCTGCGAACGCGCCCCGGCAGCGTTTCTTTGTAAGGCGGATGCAGCATCGCTCTGTTCCTCCTGCGACGCTGACATCCACTCGGCTAACCCTCTGGCGAGTCGTCACCAGAGGGTGCCAATTGGACCCATGTACGGCCCACCATCCGTCCCAGTAAATGGCACGAATAGTGAGTTCGTTGGGATGGTTGAAGATGAAGAAGATGAAGATGATGACGAAGAAGAAGCTGCTTCTTGGTTGTTGTTGAACAACACCAACACCACGGCCGCCGTGACGGCCGGCACCAACAACAACCATAATAACAGTAACAGCAGCAACAACAACCAGAATCACCATCACCACCAACAACAGAGTAATCATAATGGTTTCTTGTTTGGTGGTGAGGTTGACGAGTATTTGGACCTTGTGGATTGTAATTCTTGTGGTGATGATGATAACAATCATCATCATCACAGCAACAATAACAATAACCACTTTGCGGTTGATGGTGTTGATCATCGTTATGGTTATCAGCAGCAGTATGGTGGTGGCGGTGGTCAGAAGAGCTATGGTGGTGGTGGCGGCGGAGATAGTGTGGTGCCGGTTCAGCATTTTCAACTTGGTTTGGAGTTTGAGCCTTCCAAAGCAGGCTACAATTACAATGCTTCTATTAGTCAAAGTGTATCAGTTTCATCAATGGAAGTTGGAGTAGTGCCAGAATCATCAATCAGCAATGGATCAATTTGCCATTCAAGACCACCAAAGGGAACAATTGACCTATTTTCAGGACCTACCCCAATGCAAATGAGTTCATATCTCACTCCAATGGACAGAGAAGCCAGAGTCCTAAGGTATAGAGAGAAGAAGAAGACAAGAAAATTCGAGAAGACCATAAGGTATGCATCAAGAAAGGCCTATGCAGAGACTCGGCCGCGAATCAAAGGCCGATTCGCCAAGAGAACTGATGTTGAAGCTGAAGTTGATCAGATGTTCTCCACACCATTGATTACAGAAGTTGGTTATGGCATTGTTCCTTCATTCTGA 1209 0.4979 MLDEDTNTNTTSWAPRVCDTCRSAPCAVFCRADSAYLCASCDARVHAANTLASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPIGPMYGPPSVPVNGTNSEFVGMVEDEEDEDDDEEEAASWLLLNNTNTTAAVTAGTNNNHNNSNSSNNNQNHHHHQQQSNHNGFLFGGEVDEYLDLVDCNSCGDDDNNHHHHSNNNNNHFAVDGVDHRYGYQQQYGGGGGQKSYGGGGGGDSVVPVQHFQLGLEFEPSKAGYNYNASISQSVSVSSMEVGVVPESSISNGSICHSRPPKGTIDLFSGPTPMQMSSYLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTPLITEVGYGIVPSF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3890 402 MobiDBLite consensus disorder prediction 152 185 - -
Amo14g3890 402 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 13 402 - -
Amo14g3890 402 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Amo14g3890 402 Pfam CCT motif 333 375 IPR010402 GO:0005515
Amo14g3890 402 ProSiteProfiles CCT domain profile. 333 375 IPR010402 GO:0005515
Amo14g3890 402 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Amo14g3890 402 SMART bboxneu5 13 60 IPR000315 GO:0008270
Amo14g3890 402 SMART bboxneu5 61 103 IPR000315 GO:0008270
Amo14g3890 402 CDD Bbox1_BBX-like 17 60 - -
Amo14g3890 402 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Amo14g3890 402 CDD Bbox1_BBX-like 60 103 - -
Amo14g3890 402 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 402 IPR045281 GO:0009909
Amo14g3890 402 MobiDBLite consensus disorder prediction 152 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3890 Amo-Chr14 144392883 144395571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3890 1 402 C2C2-CO-like Transcription Factor Family AT3G02380 51.605 6.72e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Amo14g3890 zf-B_box 1.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3890 - - ahf:112744683 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3890 14 144392883 144395571 Amo14g3890 14 144392883 144395571 ECH
Amo20g3520 20 145442610 145445070 Amo14g3890 14 144392883 144395571 PCT
Amo10g2925 10 94587987 94590932 Amo14g3890 14 144392883 144395571 PCT
Amo14g3890 14 144392883 144395571 Amo20g3520 20 145442610 145445070 PCT
Amo14g3890 14 144392883 144395571 Amo10g2925 10 94587987 94590932 PCT