Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3882 ATGAGGGCTAGTGGCCTATTACTGAAGTTTCTTGAGGCAATTCTCAAAGCTGGAAACCGGATGAATGCCAGAACTTCTAGGGGAAATGCACAAGGTTTCAACCTAAGTGCTCTTAGGAAGCTTTCTGATGTGAAAAGCATTGATGGAAAGGCTAGTTTGCTACACTTCATTGTAGAGCAAGTGGCTCAGTCAAAAGGAAGAAGAGAAGCTATGAATCAAAAGCATAATATTTCCAAAATCAACGGTGATATAAGCAACTCCAATGAAAACAATAATAGCCTTGTGCAACATGAGACAGAGAAAGAGTATCTGATGCTTGGTTTACAAGTGTTATTGGGAGGTATAAAGGATGAGTTATCTGAAGTAAAGAAAGCAGCAATAATTGATCATCAGAATTTCATTAGGATGTTATACATTCTCAATGCTCGTGTTAGCAAAATTCGAGAGATTGTAACCAAATGTTGTGGCGAGAACAATGAGAGAGGTGGATTTGTTAAGGAAATGAAAGGGTTTGTAGAGGAATGTGAGGAGGAGCTTAAAGTTGTGAAAGATGAACACCTTAGGATCATGGAGCTTGTGAAGAAAACCAATGAGTATTATCTAGGAGGTGGAGGAGGATCAAACCCCTTTGAACTGTTTCTTATTGTGAGAGATCTTGTGCATGAAGAACCCCCTCGCTCATCATGGACGATCGCACAAGCAGCGGCCATGACTTCCACCTTGCGTTTGGATGAAATAGGGCTCACTGGTGGAAACGGCGTCGTTTGGCACTTCAGAGACGAATTTGTCCAGTTAAATTTTGTCCCAATCCACCTCAGCGAGTGTAACGGCCACGTCATTCACTGCCCCTCCATGTCAGCTGGCTCCGTTGCCGTTTTTGGCCCAAAACGGACGGAAGGGAAGTTCATTATGGCTCAACCGAAAACAAGAATAGGTCTTGCTGGACTGGCTGTCATGGGCCAGAATCTTGCTCTCAATATTGCCGAGAAAGGCTTTCCCATCTCTGTTTACAACCGAACCACATCGAAGGTAGATGAGACCGTTGAACGAGCAAAACATGAAGGAAATCTTCCGGTTTATGGATACCATGACCCTGAAGCTTTTGTTAACTCCATTCAAAAACCAAGGGTGATAATAATGCTTGTTAAGGCCGGCGCACCTGTTGACCAGACCATTAAGACTCTATCTACCTATTTGGAAAAGGGTGATTGTATTATTGATGGTGGTAATGAGTGGTACGAGAACACTGAAAGAAGAGAGAAAGCAGTGGCTGAATTAGGACTTCTTTATCTTGGGATGGGAGTTTCAGGTGGTGAGGAGGGTGCTCGCAATGGTCCATCTTTGATGCCTGGTGGTTCGTTTGAGGCTTTCAAATACATAGAAGACATTCTTCTCAAGGTGGCAGCTCAAGTCCCTGACAGTGGACCTTGTGTTACATATGTTGGCAAAGGTGGATCTGGAAATTTCGTGAAGATGATCCATAATGGAATTGAGTATGGTGACATGCAGCTGATTGCGGAGGCTTATGATGTACTGAAGTCAGTTGGAAAGTTGTCAAATGAGGAGCTACACAATGTCTTTGCAGAATGGAACAAGGGAGAACTTCTGAGTTTCCTTATCGAAATCACTGCTGATATATTTGGAATTAAGGATGATAAAGGAGATGGATATCTTGTTGACAAGGTTCTTGACAAAACCGGCATGAAGGGTACCGGTAAGTGGACTGTTCAGCAAGCTGCCGAGTTATCAGTAGCTGCTCCCACTATTGAATCTTCTTTGGATGCTAGGTTCCTTAGCGGGTTAAAGGAAGAGAGAGTTGAAGCTGCTAAGGTCTTCAAATCAGCTGGTTTTGGCGATATCTTGGCTGATCAATCCGTAGACAAGCAGCAGTTGATCGATGATGTTAGGAAAGCACTTTATGCGGCCAAAATCTGTAGCTATGCTCAGGGAATGAATTTGATTCGTGCAAAGAGTATCGAAAAAGGATGGGATTTGAAGTTGGGTGAACTGGCCCGGATTTGGAAAGGAGGTTGCATCATTAGAGCAATATTCCTTGACAGAATCAAGAAGGCTTACGACAGGAACCCCAATCTGGCAAACCTTCTTGTTGATCCTGAGTTTGCAAAGGAAATAATTGATCGCCAATCTGCCTGGAGGAGAGTTGTTTGCCTTGCCATCAATTCTGGTATCAGCACCCCAGGTATGTCTGCTAGTCTTGCTTACTTTGACACTTACAGAAGGGAAAGATTGCCGGCTAATTTGGTGCAAGCCCAACGTGACTACTTTGGTGCTCATACGTATGAAAGGATCGATATAGAGGGATCGTACCATACCGAATGGTTCAAGCTTGCCAAGCAATCAAAAATTTAG 2370 0.435 MRASGLLLKFLEAILKAGNRMNARTSRGNAQGFNLSALRKLSDVKSIDGKASLLHFIVEQVAQSKGRREAMNQKHNISKINGDISNSNENNNSLVQHETEKEYLMLGLQVLLGGIKDELSEVKKAAIIDHQNFIRMLYILNARVSKIREIVTKCCGENNERGGFVKEMKGFVEECEEELKVVKDEHLRIMELVKKTNEYYLGGGGGSNPFELFLIVRDLVHEEPPRSSWTIAQAAAMTSTLRLDEIGLTGGNGVVWHFRDEFVQLNFVPIHLSECNGHVIHCPSMSAGSVAVFGPKRTEGKFIMAQPKTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKHEGNLPVYGYHDPEAFVNSIQKPRVIIMLVKAGAPVDQTIKTLSTYLEKGDCIIDGGNEWYENTERREKAVAELGLLYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHNVFAEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIESSLDARFLSGLKEERVEAAKVFKSAGFGDILADQSVDKQQLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERIDIEGSYHTEWFKLAKQSKI* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3882 789 SUPERFAMILY Formin homology 2 domain (FH2 domain) 2 220 - -
Amo14g3882 789 Gene3D - 300 488 - -
Amo14g3882 789 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 249 IPR015425 -
Amo14g3882 789 PRINTS 6-phosphogluconate dehydrogenase signature 558 585 IPR006183 GO:0004616
Amo14g3882 789 PRINTS 6-phosphogluconate dehydrogenase signature 476 504 IPR006183 GO:0004616
Amo14g3882 789 PRINTS 6-phosphogluconate dehydrogenase signature 374 403 IPR006183 GO:0004616
Amo14g3882 789 PRINTS 6-phosphogluconate dehydrogenase signature 670 692 IPR006183 GO:0004616
Amo14g3882 789 PRINTS 6-phosphogluconate dehydrogenase signature 427 452 IPR006183 GO:0004616
Amo14g3882 789 PRINTS 6-phosphogluconate dehydrogenase signature 309 332 IPR006183 GO:0004616
Amo14g3882 789 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING 307 788 - -
Amo14g3882 789 Pfam Formin Homology 2 Domain 2 220 IPR015425 -
Amo14g3882 789 Pfam 6-phosphogluconate dehydrogenase, C-terminal domain 487 780 IPR006114 GO:0004616|GO:0006098
Amo14g3882 789 Gene3D Formin, FH2 domain 1 222 IPR042201 -
Amo14g3882 789 Gene3D - 489 747 IPR013328 GO:0016491
Amo14g3882 789 TIGRFAM gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 311 781 IPR006113 GO:0004616|GO:0006098
Amo14g3882 789 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 310 480 IPR006115 GO:0050661
Amo14g3882 789 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 485 782 IPR008927 -
Amo14g3882 789 PANTHER 6-PHOSPHOGLUCONATE DEHYDROGENASE 307 788 IPR006183 GO:0004616
Amo14g3882 789 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 309 483 IPR036291 -
Amo14g3882 789 SMART 6PGD_2 487 781 IPR006114 GO:0004616|GO:0006098
Amo14g3882 789 Coils Coil 165 185 - -
Amo14g3882 789 Gene3D - 750 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3882 Amo-Chr14 144304394 144311589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3882 1 220 FH2 protein (formin) Gene Family AT1G70140 49.558 4.31e-56 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3882 K00033 - gmx:100796103 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2932 10 94661857 94664689 Amo14g3882 14 144304394 144311589 PCT
Amo14g3882 14 144304394 144311589 Amo10g2932 10 94661857 94664689 PCT