Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3857 ATGGCTAGGTCTGCCAAAGGCCACCAAGAAGAATTGGACGACGACGACGAAGAACACTTCACTGCCGACACCTCTTCTCCTCACAAAGTGAAGTTGGATGAATCAAATAGTGGGAAGAGGGTGAACCCTCATCGTTCGAAGCATTCAGAGACCGAGCAGCGTAGAAGGAGTAAGATTAATGAAAGGCAAGCTCTGTTTTTGTTTCCCTTACTGTTTCAGGTTCTGAGAGATCTTATTCCTCAAAATGATCAAAAAAGAGATAAGGCTTCCTTTTTGTTGGAGGTTATTGAGTATATTCAGTTTCTGCAGGAAAAACTGCAAATTTATGAACAGACTTGTGAAGGATGGAATCAGGAACCAACGAAATTAATCCCATGGAGAGGTCATCATGGACCTGCAGAAAATAAGGCAGATACTTCTCAAGCTATGCAAAATGGATCTGCTCACGAAAAAAATGATGTCTCTCCATTATTGCCAAAAAATGTACAGAACCCAATAGAGTCTGACTTGTCAACAACAACTATCCAAAAGGGCCACACCATTGGTTCAGCTGTAGAAGCAGTTCCAATGGGCATGCAAATGAGACTGGATGCATTTGACCCAGTTGTAAGCAGCAGTATGCCAAACCAACGTCTGCATCAACCTATATCTAATGCTGATATGTCCTTCCAAATCCAGCCCCAAGTTTTGTTTAGTAAACCAAGCAGCGGCAACTATATGGTTTCGGATAATGTGTTGATGGAACATGAAGAGCTGACGAATGAAAGTGAATCACAAAGCATTTCAAATGCGTACTCGCAAGGAGTATTAGATACTCTTACACAAGCTCTGCAGTCTTCAGGAGTGGATCTGTCTCAGACTAGTGTCTCAGTGCAAATTGATGTTGGTAGAAGATCAAATCCGGGCTTTATCCCTTCTGCATCTAGCTCAAAGGTGTATGGAAACCAGTTTGTGACCAATAGAGTTAATTACTGCAGTGAAGACTCTGATCAAAGTCTAAAGAGGCTGAGAAGAGATGCCACCTAA 1026 0.422 MARSAKGHQEELDDDDEEHFTADTSSPHKVKLDESNSGKRVNPHRSKHSETEQRRRSKINERQALFLFPLLFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTCEGWNQEPTKLIPWRGHHGPAENKADTSQAMQNGSAHEKNDVSPLLPKNVQNPIESDLSTTTIQKGHTIGSAVEAVPMGMQMRLDAFDPVVSSSMPNQRLHQPISNADMSFQIQPQVLFSKPSSGNYMVSDNVLMEHEELTNESESQSISNAYSQGVLDTLTQALQSSGVDLSQTSVSVQIDVGRRSNPGFIPSASSSKVYGNQFVTNRVNYCSEDSDQSLKRLRRDAT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3857 341 MobiDBLite consensus disorder prediction 127 157 - -
Amo14g3857 341 PANTHER TRANSCRIPTION FACTOR BIM3 1 339 - -
Amo14g3857 341 MobiDBLite consensus disorder prediction 1 57 - -
Amo14g3857 341 MobiDBLite consensus disorder prediction 21 57 - -
Amo14g3857 341 Gene3D - 42 123 IPR036638 GO:0046983
Amo14g3857 341 Pfam Helix-loop-helix DNA-binding domain 45 103 IPR011598 GO:0046983
Amo14g3857 341 Coils Coil 99 119 - -
Amo14g3857 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 130 IPR036638 GO:0046983
Amo14g3857 341 SMART finulus 49 108 IPR011598 GO:0046983
Amo14g3857 341 MobiDBLite consensus disorder prediction 137 157 - -
Amo14g3857 341 CDD bHLH_AtBIM_like 45 127 - -
Amo14g3857 341 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 339 IPR044295 GO:0003700|GO:0006351|GO:0046983
Amo14g3857 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3857 Amo-Chr14 144058860 144061326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3857 3 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 39.198 1.80e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo14g3857 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3857 - - ahf:112797954 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3857 14 144058860 144061326 Amo14g3857 14 144058860 144061326 ECH