Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3845 ATGGGTTCTGTTTGTTGTTGTTTGAGTGTTAATGATTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAACTGTGGGTGCCTCAGTTCCGTCTTACAGAACTTTTTGAATGCGTATGCATCAATATTCCATAGAGGGGAAATGCAGGCAATTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCCACAGCATCACTTGATAATTCTCTATCTGACATGTACCGCTCTCCTCCAAGGCCAATGCCTTATGATGCAGACCCAAGGCATTTCCGCTCTCAGCATGATAGACTAGTTTCACGACGTGATAAGGGTTCAAGTCATGTGAATGATGAGGCAGAACCTCTAAGAGGTGATCTAGATGAGGATGACCAACAATCTTTAACTTCAAGCAACAAGTGGCATGAAATTGCCAGTGAAGATGGATCCAAAGAATACCATTCTAAGTCTTTAATAAGGCTGTCATCAGCAAAACCTACCACTGGAGTTGGACTTGTCTATTCGTCCTCAGAAGAGGAGGATTGCTGTCCAACTTGTCTTGAAGAATATACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAGAGAAGTGACACCTGTCCAGTTTGTGGGAAGGTGATGGTATTTGATGAAACGACGTAA 687 0.4163 MGSVCCCLSVNDFEDYMNPNSPVYRNCGCLSSVLQNFLNAYASIFHRGEMQAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPMPYDADPRHFRSQHDRLVSRRDKGSSHVNDEAEPLRGDLDEDDQQSLTSSNKWHEIASEDGSKEYHSKSLIRLSSAKPTTGVGLVYSSSEEEDCCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDTCPVCGKVMVFDETT* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3845 228 MobiDBLite consensus disorder prediction 71 143 - -
Amo14g3845 228 SUPERFAMILY RING/U-box 173 225 - -
Amo14g3845 228 MobiDBLite consensus disorder prediction 85 131 - -
Amo14g3845 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 227 - -
Amo14g3845 228 Pfam RING-H2 zinc finger domain 173 218 IPR024766 GO:0008270
Amo14g3845 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 225 IPR013083 -
Amo14g3845 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 227 - -
Amo14g3845 228 SMART ring_2 178 218 IPR001841 -
Amo14g3845 228 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3845 Amo-Chr14 143974561 143978672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3845 1 226 C3H Transcription Factor Family AT5G38895 54.425 2.94e-89 265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3845 14 143974561 143978672 Amo14g3845 14 143974561 143978672 ECH