Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3841 ATGATAATGGGTTCAGAGAGAGGGTGGAAGAAAGGGCCATGGACTCATGAAGAGGACAAGTTGCTCACTGAATATGTCACCTTGCATGGGGAGGGTAGGTGGAGTTCTGTGGCCAAGTTCACAGGTTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTGAATTATTTGAGGCCTGGTCTCAAGAAGGGTCAATTAACACCAATGGAAGAAGGAATAATATTTGAATTGCATGCTATTTTGGGAAACAAGTGGTCTACAATAGCAAGGTACTTGCCAGGTAGAACTGATAATGAGATCAAGAACTATTGGAGAACCCACTTCAAAAAGAAAGAGGATTCCAAGCATAACAAGAAGCTAAAAAAGAGGAGATCAAAGGTGACAAAAGAGCAAGTAGTAATGGAGGACACCAACAAAAGCAATAATAATGAAAATACCAAATCCTATGATGATGAGACAAAAGAAAACTACTACAATGATCAACACAATAATATGGGGTTTATTTACCCTAATAATAATCCAACAATGTTATTAGAGCAGCAACAAAGCTTCCCTTTGATGCACCAAGATTATTTGTCATCACCTTCATGGCCAGACACTACAACAGCAGATTATGATGCCTTGTGGTTTAGTTTATGGGACTTTGATGTACCACAGGGCTTTGAAGAACATGTTAACAACCTCACCAAATATGTAGACTGGACTTAG 711 0.3938 MIMGSERGWKKGPWTHEEDKLLTEYVTLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLRPGLKKGQLTPMEEGIIFELHAILGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEDSKHNKKLKKRRSKVTKEQVVMEDTNKSNNNENTKSYDDETKENYYNDQHNNMGFIYPNNNPTMLLEQQQSFPLMHQDYLSSPSWPDTTTADYDALWFSLWDFDVPQGFEEHVNNLTKYVDWT* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3841 236 Gene3D - 66 165 - -
Amo14g3841 236 Pfam Myb-like DNA-binding domain 65 108 IPR001005 -
Amo14g3841 236 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Amo14g3841 236 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Amo14g3841 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Amo14g3841 236 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Amo14g3841 236 PANTHER MYB TRANSCRIPTION FACTOR 5 221 - -
Amo14g3841 236 CDD SANT 68 109 IPR001005 -
Amo14g3841 236 SMART sant 10 60 IPR001005 -
Amo14g3841 236 SMART sant 63 111 IPR001005 -
Amo14g3841 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 113 IPR017930 -
Amo14g3841 236 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Amo14g3841 236 MobiDBLite consensus disorder prediction 112 127 - -
Amo14g3841 236 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Amo14g3841 236 Gene3D - 10 63 - -
Amo14g3841 236 MobiDBLite consensus disorder prediction 112 152 - -
Amo14g3841 236 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3841 Amo-Chr14 143917536 143921129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3841 8 217 MYB Transcription Factor Family AT3G30210 54.286 9.80e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo14g3841 Myb_DNA-binding 3.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3841 K09422 - gmx:100785540 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3841 14 143917536 143921129 Amo14g3841 14 143917536 143921129 ECH