Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3832 ATGATGATGCGGTTCTCTTTGATAGAGCACAAGCCACTTCATACTTGCTATTGCTTTGTGTTCTTATTCCTACTTTCCTTCTCTTCATCAGAAGCTTATGATGCACTTGACCCAAATGGAAATATCACAATCAAATGGGATGTTATTAGCTGGACAGCTGATGGTTATGTTGCTGTTGTTACAATAAACAACTTCCAACAATATCGCCATATCTCTGCACCTGGCTGGTCATTAACATGGGCATGGGCCGGCAAAGAGGTTATATGGAACATGAAGGGAGCCATGACCACTGAACAAGGAAACTGTTCAAGGCTATTTAAGGGAATAAGCCTCCCACATTCTTGTAAAAAGAATCCAACACTTGTGGATTTACTTCCCAACACACCTTACAACCAAAAACTTCCAAATTGTTGCAAAGGTGGAGTGCTTACTTCATGGACTCAGGATCCAACCAATTCGGTTGCATCATTTCAACTCACTGTTGGTCATGCTGGAACCACCAACCGAACCGTCCGAGTACCAAGGAACTTCACCTTCCATGCGCCCGGTTTGGGTTATACTTGCGGCCCGGCCAAGATTGTTAGACCAACGATGTTCATTTCACCAGACAAAAGGAGAGTCACCCAAGCAATAATGACATGGAATGTGACATGCACGTATTCACATTTTCTAGCTCAAAAATCTACTCCCACTTGCTGTGTCTCCCTCTCAACGTTTTATAATGATACTACAGTGCCTTGCCCAACATGTTCATGTGCCTGCAAGCACAGCAACTCAACCTGTGTCAAAACAGATACCGGAAAGCATGCTTCAGTTGAATGTAGTAATCATATGTGTCCAATCAGTGTCCACTGGCACCTTAATCTTAATAACAAGAACTACTGGCGTGTGAATGTTACTATTTCCAATCTCAATTATAGGATGAATTATTCAGATTGGAACATGGTTATTCAACACCCTAATTTCAACAATAATCTCACTCAAGTTTTCGGATTAAAGTACAAGTTATTTACTCCTCTAGCTGGTAGTGTAGAATTTGAGGTACTATTTAGAAAGGATAATAACTCGAGTTTGAGTTTGAAGAAAGATTGGGGTTTCCCTCAAAGGATCTATTTCAATGGTGACCACTGTGTAATGCCACCACCTCATGCTTATCCCTGGCAAGAACTGAGAGCATCAGAGTCACACCACATTCCATTTTTGCAACTAACAAACATGATGGGCTTCTTCTTCTCTTTGATGTCACACCACAAAGCTGTTCCCACTTGCTTTGTGTTCTTCTTCCTGCTTTCTTGCACCTGCTTCACTTCAACAGAAGCTTACGATGCACTTGACCCAAATGGAAACATCACAATCAAATGGGATATCATAAGCTGGACACCTGATGGTTATGTTGCTGTTGTTACAATGAACAACTTCCAACAATATCGGCATATTGCAGCACCTGGCTGGTCAATGGGATGGACATGGGCGAAGAAGGAGGTTATATGGAGCATGATGGGAGGACAAACCACTGAACAAGGAGATTGTTCAAAGTTTAAGGGAAACCCTCCACATTGCTGTAAGAAGGATCCGACCGTTGTGGATTTACTTCCCGGCACACCTTACAACCAGCAAATAGCAAATTGCTGCAAAGGTGGAGTACTTAGCTCATGGGCCCAGGATCCGACCAACGCAGTCGCATCGTTTCAAGTCAGTGTTGGTAGAGCTGGAACCACCAATAGAACTGTCAAAGTGCCCAAAAATTTCACCTTGAAAGCACCCGGTCCGGGCTATACCTGCGGGCCAGCAAAAATTGTGCCACCAACAAAGTTCATTCAATCAGACAAACGAAGAGTGACCCAAGCACTCATGACATGGAACGTGACATGCACGTATTCGCAGTTTCTAGCCCAGAAAACTCCCACTTGCTGTGTCTCTCTCTCGTCGTTTTATAATGATACTATTGTGCCTTGCCCAACATGTGCATGTGGCTGCCAGAGCAACTCATCTTGTGTAAATGCAAATACGCCACATTTGGCATCGGTCGTTGCTGGAAAGAATAACTTTTCTCCTTTAGTTCAATGCACTAGCCATATGTGTCCGGTTAGAGTCCACTGGCACGTTAAGCTTAACTACAAGGAGTACTGGCGCGTGAAGGTCACGGTTACCAATTTCAATTACAGGATGAATTATTCAGAGTGGAACTTAGTTGTTCAACACCCGAACTTTGATAATCTGACTCAACTTTTCAGTTTCAACTACAAGTCATTAACTCCTTATGGTGACATAAATGATACTGCTATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTCAATGAAGCTGGGCCTAATGGTAATGTACAATCAGAGTTGCTCTTCAGAAAGGATAAGTCAACTTTCACTTTCGAGAAAGGTTGGGCTTTCCCTCGAAGGATCTATTTCAATGGCGACAACTGCGTGATGCCACCACCGGATGCTTATCCATGGTTGCCTAATGCTGGTTCTCAAAAGGAAGTTTCCTTGCTTGTTTTAGTGTTGGCTTATTTGGTATCCTTGGTCTTTTACGCATGTGCTTGA 2562 0.4297 MMMRFSLIEHKPLHTCYCFVFLFLLSFSSSEAYDALDPNGNITIKWDVISWTADGYVAVVTINNFQQYRHISAPGWSLTWAWAGKEVIWNMKGAMTTEQGNCSRLFKGISLPHSCKKNPTLVDLLPNTPYNQKLPNCCKGGVLTSWTQDPTNSVASFQLTVGHAGTTNRTVRVPRNFTFHAPGLGYTCGPAKIVRPTMFISPDKRRVTQAIMTWNVTCTYSHFLAQKSTPTCCVSLSTFYNDTTVPCPTCSCACKHSNSTCVKTDTGKHASVECSNHMCPISVHWHLNLNNKNYWRVNVTISNLNYRMNYSDWNMVIQHPNFNNNLTQVFGLKYKLFTPLAGSVEFEVLFRKDNNSSLSLKKDWGFPQRIYFNGDHCVMPPPHAYPWQELRASESHHIPFLQLTNMMGFFFSLMSHHKAVPTCFVFFFLLSCTCFTSTEAYDALDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIAAPGWSMGWTWAKKEVIWSMMGGQTTEQGDCSKFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWAQDPTNAVASFQVSVGRAGTTNRTVKVPKNFTLKAPGPGYTCGPAKIVPPTKFIQSDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCQSNSSCVNANTPHLASVVAGKNNFSPLVQCTSHMCPVRVHWHVKLNYKEYWRVKVTVTNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGDINDTAMLWGVKFYNDFLNEAGPNGNVQSELLFRKDKSTFTFEKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAGSQKEVSLLVLVLAYLVSLVFYACA* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3832 853 PANTHER COBRA-LIKE PROTEIN 15 403 - -
Amo14g3832 853 PANTHER COBRA-LIKE PROTEIN 418 852 - -
Amo14g3832 853 PANTHER PROTEIN COBRA 15 403 IPR006918 GO:0010215|GO:0031225
Amo14g3832 853 Pfam COBRA-like protein 464 627 IPR006918 GO:0010215|GO:0031225
Amo14g3832 853 Pfam COBRA-like protein 56 221 IPR006918 GO:0010215|GO:0031225
Amo14g3832 853 PANTHER PROTEIN COBRA 418 852 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3832 Amo-Chr14 143807665 143818074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3832 426 851 COBRA Gene Family AT3G02210 74.769 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3832 - - gmx:100783820 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3832 14 143807665 143818074 Amo14g3832 14 143807665 143818074 ECH
Amo20g3492 20 144913608 144916837 Amo14g3832 14 143807665 143818074 PCT
Amo10g2943 10 94852241 94853330 Amo14g3832 14 143807665 143818074 PCT