Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3807 ATGAATAACAGTAATAGTCCAAAAGACCCATCAGATTTTCCACTAAAACAAGAGAGTAGTGATCATCATCAACATGAAAAGGCATCATCATCATCAGCAGCAGCAGCAGCAAAGGCTTCTTCATCATCATCATCATCACAATGGCTAAGGTTGAAGGATCCAAGAATTGTTAGGGTATCAAGAGCATTTGGAGGAAAAGACAGGCACAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGGCGTGTGAGGCTTTCAGTTCCAACAGCAATTCAGCTCTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGTAAGGTTGTTGATTGGTTGTTAAATGCTGCTAAGCATGAAATTGATGAGCTTCCACCTTTGCCACATATCAATAATCCCTTCACTAACCTTAGTGGTTTTCCATCATCATCTTCTAATTCTATGATCAATACTAATGAAGCTAGCACCTCAATGTTCAATATCAATAGGAGCATTCATCAGTGGCAAGGTTTAGCACAGAATTATTCTAAGTGGAATAATAACAAGTCAAAGTCATCATCATCTACTAAACAAGCTTCATCAGAAGATAATAATCAAATAGTTACTGAAGAGGATAACAATAACAAGGAAGAGGAGGAAGGTGAAGAAGAAGGTGCAAATGTTGTTTCTACTACAAATCATCATCATCATCCTTCATTCCTAGGTTTGCTGAATACTATGCCAATTGGTAACTACCAATTTGAGCAACATAACTCATCAAATGATGTTAATGTTGCTCAATTGGGAAACCATAATCATGGGTTTATTACAAACCAAACAGATTTGCAAAGCATTAATCTTGTCCCTTTTCCATCAACATTGTCCTTATCAACTGGTGGGAACAATATAACACAGTCATACTTCCCTTCACATTCATCAGAAGCAATGGATCCAAGACAAGAACAACAAATCAATCATCATCATCATCATCAGTATCATCAGATGTTGACCTCTCATCATCTTCATCAAAATCTCTTGACAAATAATCTTCCATCTTTCAGCTTGGCTATGATGAGCACTCCAATCCTTCTCCACCATTCTCACAACACAAGAGAAAGTAGTAGTCATCAATCTCATCACAAAGATCACCATTTTCCTTCTTCCAAGTGA 1146 0.3743 MNNSNSPKDPSDFPLKQESSDHHQHEKASSSSAAAAAKASSSSSSSQWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPHINNPFTNLSGFPSSSSNSMINTNEASTSMFNINRSIHQWQGLAQNYSKWNNNKSKSSSSTKQASSEDNNQIVTEEDNNNKEEEEGEEEGANVVSTTNHHHHPSFLGLLNTMPIGNYQFEQHNSSNDVNVAQLGNHNHGFITNQTDLQSINLVPFPSTLSLSTGGNNITQSYFPSHSSEAMDPRQEQQINHHHHHQYHQMLTSHHLHQNLLTNNLPSFSLAMMSTPILLHHSHNTRESSSHQSHHKDHHFPSSK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3807 381 Pfam TCP family transcription factor 65 211 IPR017887 -
Amo14g3807 381 ProSiteProfiles TCP domain profile. 65 123 IPR017887 -
Amo14g3807 381 MobiDBLite consensus disorder prediction 1 46 - -
Amo14g3807 381 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 373 IPR005333 GO:0003700
Amo14g3807 381 MobiDBLite consensus disorder prediction 361 381 - -
Amo14g3807 381 MobiDBLite consensus disorder prediction 176 200 - -
Amo14g3807 381 MobiDBLite consensus disorder prediction 360 381 - -
Amo14g3807 381 MobiDBLite consensus disorder prediction 14 28 - -
Amo14g3807 381 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 18 373 - -
Amo14g3807 381 MobiDBLite consensus disorder prediction 176 231 - -
Amo14g3807 381 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3807 Amo-Chr14 143542179 143544683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3807 16 312 TCP Transcription Factor Family AT3G02150 40.635 4.47e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo14g3807 TCP 8.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3807 - - gmx:100816424 272.322