Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3784 ATGGCGTTCCTCAATAGAATGGGAAGCCTCCTGAAGCAATCTGCTGTCAGGCACATCAATCAAGAGTTGTCTGGATCGAAACCTTCGATTTTCCAGGCTATTCGATCCATGTCATCTTCAAAGCTTTTCATTGGAGGTATTTCATATAGCACAGATGAGATGAGTCTGCGGGAGGCTTTTGCACGCTATGGAGAAGTAGTTGATGCAAGGGTTATTATGGACCGTGAAACTGGAAGGTCCAGAGGTTTTGGATTCATAACTTTTGCAACAACTGAGGATGCATCTTCTGCCATTCAAGCGATGGATGGCCAGGATCTTCATGGTCGGAGAATACGTGTGAACTATGCTGCAGAAAAATCACGTCCAGGATTTGGTGGTGGTGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTGGTGGCTATGGAGGTGGTGGCTATGGCGGTGGTAATTACGGTGGTAGTGATAATAGTGGTGGAAGTTATGGAGGTGGTGGATATGGTGCCCCAGCAAGCTATGGCGGTGGCAGCACTCAAACTAGTTTCGCAGATAGCGGTGCTAGTAATTTCCAATTCAATGATAACTCTGGTGGAGATCTTCCCTCTGGTGGAGGCAATACGGGTTTGGGATATGATCATGAGTTTGATGAACAAAAGGACAGAACAGATGGGGAGTTTCAAGACAACAATCTGAGGGAAAACAATGATGAATCCAGTGATATCGCACAGAACCGTGGGTGA 741 0.4723 MAFLNRMGSLLKQSAVRHINQELSGSKPSIFQAIRSMSSSKLFIGGISYSTDEMSLREAFARYGEVVDARVIMDRETGRSRGFGFITFATTEDASSAIQAMDGQDLHGRRIRVNYAAEKSRPGFGGGGGGYGGGGYGGGGGYGGGGYGGGNYGGSDNSGGSYGGGGYGAPASYGGGSTQTSFADSGASNFQFNDNSGGDLPSGGGNTGLGYDHEFDEQKDRTDGEFQDNNLRENNDESSDIAQNRG* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3784 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Amo14g3784 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Amo14g3784 246 MobiDBLite consensus disorder prediction 176 246 - -
Amo14g3784 246 Gene3D - 10 137 IPR012677 -
Amo14g3784 246 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 212 - -
Amo14g3784 246 MobiDBLite consensus disorder prediction 176 202 - -
Amo14g3784 246 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 212 - -
Amo14g3784 246 PRINTS Eggshell protein signature 36 52 - -
Amo14g3784 246 PRINTS Eggshell protein signature 137 152 - -
Amo14g3784 246 PRINTS Eggshell protein signature 162 172 - -
Amo14g3784 246 PRINTS Eggshell protein signature 197 215 - -
Amo14g3784 246 SMART rrm1_1 41 114 IPR000504 GO:0003723
Amo14g3784 246 MobiDBLite consensus disorder prediction 212 240 - -
Amo14g3784 246 SUPERFAMILY RNA-binding domain, RBD 30 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3784 Amo-Chr14 143159377 143162296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3784 31 119 Eukaryotic Initiation Factors Gene Family AT3G16380 39.326 1.72e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3784 K12741 - gmx:100807155 250.366