Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3766 ATGGCTATGGCTACGTCTCGTTGTTTGGTTCCTTTGGTCATTTTCATGTATTCCTTAGCCATTTCAGGTGCCATTGATGGTAATTGGTATGATGCTCATGCAACATTCTATGGTGACATACGAGGTGGAGAAACCATGAGGTATGGACTTGCAAACACAGCACTAAGCACTGCTCTATTCAACCGTGGACTAACATGTGGTGCATGTTTTGAGATCCAATGTGTGAATGATCCACAATGGTGTATTAAGGGTGCAGGAACAATCAAAGTAACAGCAACAAATTTTTGTCCTCCAACTAACGAAAAAGGTCGTCCACCATGGTGTAACCCTCCACAAAAGCACTTCGATTTGTCCATGAAAATGTTCACAACAATAGCAAACTACAAAGCAGGGATAATCCCAGTTCGTTATAGGCGCACTCCGTGCATTAAACATGGTGGTGTCAGGTTTGAGTTGAAGGGTAACCCTCATTGGTTGCTAGTGTTGGTTTTTAATGTTGCAAATGCTGGTGATGTTACAAATGTTAAAATATCAGGTTCAACCGCACGTGCATGGATTCCTATGACA 567 0.4215 MAMATSRCLVPLVIFMYSLAISGAIDGNWYDAHATFYGDIRGGETMRYGLANTALSTALFNRGLTCGACFEIQCVNDPQWCIKGAGTIKVTATNFCPPTNEKGRPPWCNPPQKHFDLSMKMFTTIANYKAGIIPVRYRRTPCIKHGGVRFELKGNPHWLLVLVFNVANAGDVTNVKISGSTARAWIPMT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3766 189 Gene3D - 147 189 IPR036749 -
Amo14g3766 189 PANTHER EXPANSIN-A15 15 188 IPR002963 GO:0009664
Amo14g3766 189 SMART dpbb_1 52 137 IPR007112 -
Amo14g3766 189 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 147 IPR007112 -
Amo14g3766 189 SUPERFAMILY Barwin-like endoglucanases 28 165 IPR036908 -
Amo14g3766 189 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Amo14g3766 189 PRINTS Expansin signature 47 61 IPR002963 GO:0009664
Amo14g3766 189 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Amo14g3766 189 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Amo14g3766 189 PRINTS Expansin signature 88 98 IPR002963 GO:0009664
Amo14g3766 189 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Amo14g3766 189 PRINTS Expansin signature 74 85 IPR002963 GO:0009664
Amo14g3766 189 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 189 IPR007117 -
Amo14g3766 189 PANTHER EXPANSIN-A21-RELATED 15 188 - -
Amo14g3766 189 Pfam Lytic transglycolase 53 137 IPR009009 -
Amo14g3766 189 Gene3D - 17 142 IPR036908 -
Amo14g3766 189 Pfam Expansin C-terminal domain 148 189 IPR007117 -
Amo14g3766 189 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Amo14g3766 189 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3766 Amo-Chr14 142803661 142804859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3766 22 188 Expansin Gene Family AT5G39270 58.659 6.45e-73 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3766 - - cpap:110820230 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3766 14 142803661 142804859 Amo14g3766 14 142803661 142804859 ECH