Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3742 ATGGCAGCCAGCACTACTTTCTCTCTCTGTTTTGCTGCTGCGTCTTCTTCTTCTTCTTCTTGTAATCATAATTCTAATCCTTTAACGCCATTGAATCAGAGGCCAAGGCCTTTGGGAATAGCGAATCGCTTCGTTTCGTCTTCGGTGGCTGCGCCTTTGTCTTCTCTGTGCTTCGGTGCTTCTGCTTCTGTATTCAGCTCCAAAGCAAGGATTTTCACGGCGTTAGCAGCGGTCGTCGATGAAGAGACGGCGGTTGCGGAACGGGAGCGTGGTTTGGCGGAAAATGATGGCGGTTCCGACGAGGAAGAGCAGTGGAAGATGCCGAGAGCGACGGAGGTTTACGTCTGCAACCTTCCAAGGAGCTGTGACACCGAACAGCTACGTCAGATGTTCGAGCCTCACGGAACTATTCTATCCGCTGAGGTTTGCCGGAATGCTGATACTGGTGAGAGTAGAGGATGTGCTTATGTGACATTGTCATCTGTTGCCTCAGCAAGAAATGCAGTCACTGCCTTGGATGGATCGGATGTTGGTGGACGGGAGATGCGGGTTAGATTCTCAGTTGAGATGAATCCCCAGAGGAGGAACCTTGAGACTGCGAATGCTTCACCAAAGAGAGTTGTATACTATGAAGCTCCTCATAAGTTGTATGTTGGGAATCTTGCTAGGGCAGTTAGACCTGAAGAGTTGAGACATCTTTTTAGCAAATTCGGCAATGTGGCTAGTGTAAGATTGTTGAAAGATCAGAAACAAGGGCGAACCCGAGTTTATGCGTTTCTCTCTTTCCTATCGGAGAAAGAACGTGATGCTGCATTGACCCTGAATGGAGCGGAACTTTGTGGTCGGACGTTGGTGGTTAGAGTGGGTATAGACAAGGGTGAAGCTTAA 888 0.4887 MAASTTFSLCFAAASSSSSSCNHNSNPLTPLNQRPRPLGIANRFVSSSVAAPLSSLCFGASASVFSSKARIFTALAAVVDEETAVAERERGLAENDGGSDEEEQWKMPRATEVYVCNLPRSCDTEQLRQMFEPHGTILSAEVCRNADTGESRGCAYVTLSSVASARNAVTALDGSDVGGREMRVRFSVEMNPQRRNLETANASPKRVVYYEAPHKLYVGNLARAVRPEELRHLFSKFGNVASVRLLKDQKQGRTRVYAFLSFLSEKERDAALTLNGAELCGRTLVVRVGIDKGEA* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3742 295 Gene3D - 76 198 IPR012677 -
Amo14g3742 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Amo14g3742 295 PANTHER OS02G0815200 PROTEIN 32 293 - -
Amo14g3742 295 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 32 293 - -
Amo14g3742 295 CDD RRM_SF 216 287 - -
Amo14g3742 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 291 IPR000504 GO:0003723
Amo14g3742 295 SUPERFAMILY RNA-binding domain, RBD 213 293 IPR035979 GO:0003676
Amo14g3742 295 SUPERFAMILY RNA-binding domain, RBD 107 196 IPR035979 GO:0003676
Amo14g3742 295 SMART rrm1_1 112 185 IPR000504 GO:0003723
Amo14g3742 295 SMART rrm1_1 215 287 IPR000504 GO:0003723
Amo14g3742 295 Gene3D - 199 295 IPR012677 -
Amo14g3742 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Amo14g3742 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3742 Amo-Chr14 142545793 142547849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3742 113 286 Eukaryotic Initiation Factors Gene Family AT1G22760 29.143 3.20e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3742 - - adu:107486682 522.316