Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3646 ATGCCGCAACGAACAGTGAAGAAAGGTGCTGCGGCGAAAAGAGCGAAGACCGCCCTTGAAAACAACAACCATACTGACAACCTTGGGCAAGAGCCTGAAACTGCGGAAGCGGTTGTGAATAATCATGAAGAAGAAGAAGAAGACATAGCTAATGATGAGAAAAGTGTTCTTTCGGATGAGAAGCTCGATGATGTGAAGAACAAAGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACAGTTAGATTTTGAGGATAACTATCCTGAGTATGAACCTTTAGAGGACTATAACGGAGTTGACTATGATGAAAAGGAAACTGAACAAGACGAGCATCAGGAGGTTAGAGATGAAGTAGAGGAAGAGTGTGAAGTAGTTGCAGGAGAAGATGATATTTCAGGTGATGAAGAAATTGAATACGTTTATGAAGAAGTTGAGGTTGATGAGGATGATGAGCATAATGATGAGGAACATGATCATTCGTCACGGATGGCTGATGCGGAGCAAAAGGAGCACCCTGAAGGTGTAAATAAGAGACACAAGCAGAAGGAATTTGAAGTATTTGTCGGAGGCTTATATAAGGATGCTACTGAGGAGGATCTGAGGAAGGTTTTTGGTGAAGTTGGGGTAATTACTGAAGTCAGGCTGATGATGAATCCTCATACTAAAAAGAACAGAGGATTTGCATTCTTGCATTTTGAAACTATTGAACAAGCTAAAAAAGCTGCAACAGAGCTGAAAAATCCAGTGATTAATGGCAAACAATGCCGTGTTTCTCCCGTTCAAGACAATGATACCATCTATTTGGGTAATATATGCAAGACATGGAAATTAGAAGCACTAAAAGATAAGCTGAGACATTATGGGGTTGGAAATTTTGAGAACCTGACTTTAGTAGAAGACAGTAACAATGAAGGAATGAACCGTGGATTTGCATTTTTGGATTTTTCATCTCGTTCTGAGGCTAGGAAAGCCTATACACAACTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAAGCCAGCAGAGATTTCATTTACAGACTCCTTTATTGACCCAGTTGATGATATTATGGCACAGGTTAAAACTGTATTTATAGATTCCCTGCCTCCTTCATGGGATGAAGATTATGTCCGAGATCTTCTTAAGAAATATGGGGAGATCGAAAAGATTGAGCTTGCTAAAAACATGCCAGCTGCCAGTAGGAAGGATTTTGGATTTGTTACGTTTGGTACACATGCTGCTGCCGTGGAATGTGCTGGTAGCATTACCAGCTCAGGATTGGGTGAAGGTGACAAGAAGGCAAAAGTTAAGGCTAGATTGTCAAGGCCTCTTCGGAAAGGCAGTAGAAAACATGTTAGCCATGCGGCCTACAGTTCTGGTCGCAATTCTGGAATCTTAGCAAGGCCTTCAAGAGCTAGACCTGCACCACGTAGTCTTCCTGCTCGCATGGTAAGACGAATTGAAAGTCATGTTCCACCTGTTAGGCCTTTTAGTGTGATGGATAGACGGCCTGTTAGTGTGAGAGATAGAAGACCTGTTATGTCTATGTCACTGAGATCAAGGCCAGTGTCTCATCTAGCCAGATCCTCTGAGAGGAGATTGAGTACATCTGGATATCCAAAAAGTAGCATGAAGAGAGACTATGGTCTATGTGAGGAATTGCCACCTCCAAGAAGTAGAGTTGCTGTAGATTATGGGTCTAGGATGTCCTCTCAAAAACACCTCTCCTACAGGGATTATCCAGCCCATGGCTCTCGCTACCCTGAGCTGCGTAAAGGTACGTCTCGTACTTCAGCAGCTGCACCTATGAGAAGTTATGTGGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCTTTCTTCTTCCCATTTTAATCACCGTGAAGGACACTCCCGTGATTATGAGACACTGTCGGGTTCGAAACGTACTTATTCTGTCATAGATGATGCCCCTCCTCGATATGCTGATACTGGTGCTCGCCAGTCAAGATCACGTTTGGACTATGAGTATGGGGGTAGTACTTCACAATATGGAGATGCCTATGGCGATAGACTTGGAAGATCTAGTCTGGGCTATAGTAATGGCAGGAGTTCTATATCTACTCGAGACACTCATGGAATGTATAGCAGTCGGCAGAGCACAAGTTACAGTGCAGGTTCTTTTGGCGGAAGTGATCGTGATTTGTACTCAGCAAGTTATGGTGGTGATTACATATCTCGTGGCAGTGATGCTGGTGGCAGATCATATTCGTCAATGTATTCCAGCAGGGGTGTGGGTGGTAGTAGCAGCTATATGAGTGGTAGTAGATCTAGGTCGTATTACTGA 2340 0.4321 MPQRTVKKGAAAKRAKTALENNNHTDNLGQEPETAEAVVNNHEEEEEDIANDEKSVLSDEKLDDVKNKEEEVKESIDEYEKDEQLDFEDNYPEYEPLEDYNGVDYDEKETEQDEHQEVRDEVEEECEVVAGEDDISGDEEIEYVYEEVEVDEDDEHNDEEHDHSSRMADAEQKEHPEGVNKRHKQKEFEVFVGGLYKDATEEDLRKVFGEVGVITEVRLMMNPHTKKNRGFAFLHFETIEQAKKAATELKNPVINGKQCRVSPVQDNDTIYLGNICKTWKLEALKDKLRHYGVGNFENLTLVEDSNNEGMNRGFAFLDFSSRSEARKAYTQLQKRDVVFGVDKPAEISFTDSFIDPVDDIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELAKNMPAASRKDFGFVTFGTHAAAVECAGSITSSGLGEGDKKAKVKARLSRPLRKGSRKHVSHAAYSSGRNSGILARPSRARPAPRSLPARMVRRIESHVPPVRPFSVMDRRPVSVRDRRPVMSMSLRSRPVSHLARSSERRLSTSGYPKSSMKRDYGLCEELPPPRSRVAVDYGSRMSSQKHLSYRDYPAHGSRYPELRKGTSRTSAAAPMRSYVDDGYGQRFERPPLSSSHFNHREGHSRDYETLSGSKRTYSVIDDAPPRYADTGARQSRSRLDYEYGGSTSQYGDAYGDRLGRSSLGYSNGRSSISTRDTHGMYSSRQSTSYSAGSFGGSDRDLYSASYGGDYISRGSDAGGRSYSSMYSSRGVGGSSSYMSGSRSRSYY* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3646 779 Gene3D - 267 351 IPR012677 -
Amo14g3646 779 MobiDBLite consensus disorder prediction 150 182 - -
Amo14g3646 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Amo14g3646 779 SUPERFAMILY RNA-binding domain, RBD 359 464 IPR035979 GO:0003676
Amo14g3646 779 MobiDBLite consensus disorder prediction 621 726 - -
Amo14g3646 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Amo14g3646 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 336 IPR000504 GO:0003723
Amo14g3646 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 422 IPR000504 GO:0003723
Amo14g3646 779 SUPERFAMILY RNA-binding domain, RBD 189 335 IPR035979 GO:0003676
Amo14g3646 779 Coils Coil 35 55 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 54 80 - -
Amo14g3646 779 Coils Coil 58 85 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 749 779 - -
Amo14g3646 779 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 779 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 81 107 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 744 779 - -
Amo14g3646 779 Coils Coil 105 125 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 625 642 - -
Amo14g3646 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 352 IPR000504 GO:0003723
Amo14g3646 779 MobiDBLite consensus disorder prediction 695 726 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 159 182 - -
Amo14g3646 779 Gene3D - 357 475 IPR012677 -
Amo14g3646 779 SMART rrm1_1 269 348 IPR000504 GO:0003723
Amo14g3646 779 SMART rrm1_1 189 262 IPR000504 GO:0003723
Amo14g3646 779 SMART rrm1_1 366 441 IPR000504 GO:0003723
Amo14g3646 779 MobiDBLite consensus disorder prediction 445 481 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 522 559 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 1 127 - -
Amo14g3646 779 CDD RRM_SF 367 422 - -
Amo14g3646 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 447 IPR000504 GO:0003723
Amo14g3646 779 PANTHER RNA RECOGNITION MOTIF 1 779 - -
Amo14g3646 779 MobiDBLite consensus disorder prediction 582 603 - -
Amo14g3646 779 CDD RRM_SF 270 337 - -
Amo14g3646 779 Gene3D - 104 263 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3646 Amo-Chr14 141164659 141170634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3646 190 413 Eukaryotic Initiation Factors Gene Family AT4G34110 23.750 1.37e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3646 - - gmx:100808583 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0634 19 9849806 9856389 Amo14g3646 14 141164659 141170634 PCT