Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3522 ATGGGGGCAAAAGGATTGATTGAGAAAGATTTCTTGTTCTTATTAAAAGATCGTGATTGGATCCACATATGTTTATTACTCTTCAGTGCGGAGTGGAAGAAGGAAGAGAGGAGATTCTCGAATGAAAAAAAGGATCCAATGACTTGGAAAGAATTGAACGAGGAGCCATATGAGGGTGACTTATCTGTCAACTTTTTTACTATCACCCCAAAAAAACTAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCAGTATTGACCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATTGTCATCAACAAGGTCGTTCTAGTGTGTTAATAGATCCGAGTCAAATAGCAATGATTCGAAGCACTTTACACTATTTTGGAAATCTAAGGACTCAATCATATGGATATGTAAAATACAGGATTTCTAATCCTAGCAAGAAAAGGGGGGAAACGGATACTCAATTTCAAAGTGAGTAA 588 0.3827 MGAKGLIEKDFLFLLKDRDWIHICLLLFSAEWKKEERRFSNEKKDPMTWKELNEEPYEGDLSVNFFTITPKKLNSALRKVARVRLTSGFEITAYIPSIDHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDCHQQGRSSVLIDPSQIAMIRSTLHYFGNLRTQSYGYVKYRISNPSKKRGETDTQFQSE* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3522 195 CDD Ribosomal_S12 66 137 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo14g3522 195 PRINTS Ribosomal protein S12 signature 105 122 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo14g3522 195 PRINTS Ribosomal protein S12 signature 86 105 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo14g3522 195 PRINTS Ribosomal protein S12 signature 55 70 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo14g3522 195 PRINTS Ribosomal protein S12 signature 70 85 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo14g3522 195 PRINTS Ribosomal protein S12 signature 122 138 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo14g3522 195 SUPERFAMILY Nucleic acid-binding proteins 47 140 IPR012340 -
Amo14g3522 195 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 51 146 IPR006032 GO:0003735|GO:0005840|GO:0006412
Amo14g3522 195 PANTHER 30S RIBOSOMAL PROTEIN S12-B 51 146 - -
Amo14g3522 195 Gene3D - 29 156 IPR012340 -
Amo14g3522 195 TIGRFAM rpsL_bact: ribosomal protein uS12 42 144 IPR005679 GO:0003735|GO:0006412|GO:0015935
Amo14g3522 195 Pfam Ribosomal protein S12/S23 51 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3522 Amo-Chr14 138793542 138794508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3522 68 127 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 41.176 3.58e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3522 K02950 - zju:112488768 160.614