Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3502 ATGGAAGATTACGCTGCCAGCAGCGATGATGAATACCGTTACTCCGATCCGGAGGACTCCGTCGACGCCTTCGATAACGATGATAACGATTATGAATTAGTCTCTTCCAAGGGTCCCTCTACTCAGGTGATTACGAAGGAGTCATTGCTAGCTGCACAGAAGGAGGATTTGCGCAGGGTGATGGACATGCTATCGGTGAGAGAGCAACATGCACGAACCCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCCGTGTATGTAGATAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAACATCGCGACGACTCTAATTCATCAGCTGCTCCTTTGACAATAATGTGCGAAATTTGCATAGAGGATGTTCCTACTGATGAAACAACAAAAATGGACTGCGGTCACTGTTTTTGCAACCCCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGAATCAGATGCATGGCACACAAATGTTATTCCATTTGTGATGAAGCTGTTGTCAGAACTCTTCTCAGCAAAAAGCACCCCGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGTCCTAGTGCGCCTCATTGTGGGAATGCAATACGTGTTGAGGACGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGCTTTAGTTGCTTGTCAGAAGCACATTCCCCATGCTCATGTTTGATGTGGGAGCTTTGGGCCAAAAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACGAAGCCTTGTCCAAAGTGCCACAAACCGGTCGAGAAAAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACCGGTCGAGAGCATACCTTGTCAAGCATTGCTGCTCATAGCTGTGGTCGCTATGAAGAGCAAGAAAAAACAGCTGAAAGGGCAAAGAGGGATCTGTATCGTTATATGCATTATCATAATCGTTACAAAGCTCACACAGATTCCTTTAAGCTTGAGAGTAAACTGAAGGAGACTATACAAAAGAAGATTGCTGTCTCAGAAGAAAAACATTCTACGCTAAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCGTTTTACATGTTTGGTGACGAACTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAATTTGTTTGAGGATCAGCAGCAGCAGCTTGAGGCAAACGTTGAAAAGCTCTCCAAAATTTTGGAGGAACGTTTTCAAACTTTTAAATATGATAAAGTCATGGAGATAAGGATGCAGATAATCAATCTGACCACTATCATTGACAAACTTTGTCAAAAAATGTATGAGGGTATTGAGAATGATTTACTGGGTTCTCTCCATATTGGTGTTCACAACATTGCTCCATACAAGTCAAAGGGGATCGACAAGGCATCAGAACTTTCAGTTCACAACATTGCTCTATAA 1593 0.4143 MEDYAASSDDEYRYSDPEDSVDAFDNDDNDYELVSSKGPSTQVITKESLLAAQKEDLRRVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDRGKHFLFSEAGVTVDEHRDDSNSSAAPLTIMCEICIEDVPTDETTKMDCGHCFCNPCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDELCEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTLSSIAAHSCGRYEEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQKKIAVSEEKHSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEERFQTFKYDKVMEIRMQIINLTTIIDKLCQKMYEGIENDLLGSLHIGVHNIAPYKSKGIDKASELSVHNIAL* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3502 530 SMART ibrneu5 264 329 IPR002867 -
Amo14g3502 530 SMART ibrneu5 194 256 IPR002867 -
Amo14g3502 530 ProSiteProfiles TRIAD supradomain profile. 119 333 IPR044066 -
Amo14g3502 530 Gene3D - 252 499 - -
Amo14g3502 530 SUPERFAMILY RING/U-box 121 206 - -
Amo14g3502 530 MobiDBLite consensus disorder prediction 1 28 - -
Amo14g3502 530 Pfam Ariadne domain 333 526 IPR045840 -
Amo14g3502 530 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 504 IPR031127 GO:0004842|GO:0016567
Amo14g3502 530 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 -
Amo14g3502 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 209 IPR013083 -
Amo14g3502 530 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 504 - -
Amo14g3502 530 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
Amo14g3502 530 SUPERFAMILY RING/U-box 194 262 - -
Amo14g3502 530 SUPERFAMILY RING/U-box 275 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3502 Amo-Chr14 138384677 138386269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3502 61 523 ARIADNE family AT2G16090 72.258 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3502 K11968 - gmx:100783343 933.71