Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3501 ATGACTTTATATGAAAGAGGTTTTTTTAAAATTCTTGTTCAAAGCTTTCAGCATGAGTTGAAAATTCCTAAAGCTTTTGTGAAAGAATATTGGAGAGGAGTATCAAATCCTATAGTGTTAAAGCTACCAAACACTCTTAAACAAAGAGTATATTGGATTCAAAAGAATGAAGATGAAATTTGGTTGGAAGAAGGTTGGGAACAAGTTGTGAAAGATTTTGGCTTAGAACATTCTCAATTTTTGACTTTTGACTATAAAAGACGGTCTTGCTTTGAAGTCAAAATATATCCTATGAATGATTCTGAGATAATGCCTCCTCATCATCAAATATGTTTCTTTCAGGTTCTTGTTCACAACAAGTTTCACCAAAAGCTGATGGTTCCTAAAGGTGCAAATGAATATTGGAAAAGAATCTCAAACCCTATAAAGTTGGTGTTACCTTATGGTGTTGAAAGGAAAGTGAATTGGACCAAAAGAGGAGAAAATATTTGGTTGGAACAAGGTTGGAAAAAGGTTGTGGAGTTGTGTGGTTTGAGTTACGAGTGGTTGTTGACTTTTGACTACAATGGAATGTCTCGTTTTGAAGTCAAAGTATATGATACCAATACTTTAAGGGTAGCTTATTATAAGGAGTATGATGTTGAGAATAACAAAGATGTTGATGAAACTGAGAACGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAGTTTGTTCAAGAACACTTCAAGAGAAAGAAGACCAACAAAGTTAATGGGAGCAATAGGAATCCCAGTTTCAAGATTCGAATTCAAGAATCATATGTTGGGTCAACATGCGTGGCAATACCAGCAACGTTTGAAAGGAAGCATTTGGAGGAAGGACCGATTCGCATGATTGTGGGTAATAGAGCTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGGGCCAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGCGGTTGGTGATGTTTGTGTCTTTGAGTTAACTAGCGAATTTCCTCAGACAATGATTGTCAGAGTGCAGAGTGGATGA 1086 0.3637 MTLYERGFFKILVQSFQHELKIPKAFVKEYWRGVSNPIVLKLPNTLKQRVYWIQKNEDEIWLEEGWEQVVKDFGLEHSQFLTFDYKRRSCFEVKIYPMNDSEIMPPHHQICFFQVLVHNKFHQKLMVPKGANEYWKRISNPIKLVLPYGVERKVNWTKRGENIWLEQGWKKVVELCGLSYEWLLTFDYNGMSRFEVKVYDTNTLRVAYYKEYDVENNKDVDETENDDDDDDDDDDDDDDDDDEFVQEHFKRKKTNKVNGSNRNPSFKIRIQESYVGSTCVAIPATFERKHLEEGPIRMIVGNRAWTVCYKTWRGRARYRKHKLQSGWLRFRRENNLAVGDVCVFELTSEFPQTMIVRVQSG* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3501 361 SUPERFAMILY DNA-binding pseudobarrel domain 261 359 IPR015300 -
Amo14g3501 361 MobiDBLite consensus disorder prediction 218 242 - -
Amo14g3501 361 PANTHER B3 DOMAIN-CONTAINING 8 106 - -
Amo14g3501 361 PANTHER B3 DOMAIN-CONTAINING 109 256 - -
Amo14g3501 361 Gene3D - 104 203 IPR015300 -
Amo14g3501 361 Gene3D - 3 99 IPR015300 -
Amo14g3501 361 ProSiteProfiles B3 DNA-binding domain profile. 265 361 IPR003340 GO:0003677
Amo14g3501 361 CDD B3_DNA 264 358 IPR003340 GO:0003677
Amo14g3501 361 PANTHER B3 DOMAIN-CONTAINING 260 349 - -
Amo14g3501 361 SUPERFAMILY DNA-binding pseudobarrel domain 8 105 IPR015300 -
Amo14g3501 361 Gene3D - 243 360 IPR015300 -
Amo14g3501 361 SMART B3_2 112 202 IPR003340 GO:0003677
Amo14g3501 361 SMART B3_2 266 359 IPR003340 GO:0003677
Amo14g3501 361 SMART B3_2 8 99 IPR003340 GO:0003677
Amo14g3501 361 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Amo14g3501 361 Pfam B3 DNA binding domain 271 357 IPR003340 GO:0003677
Amo14g3501 361 SUPERFAMILY DNA-binding pseudobarrel domain 109 204 IPR015300 -
Amo14g3501 361 CDD B3_DNA 8 97 IPR003340 GO:0003677
Amo14g3501 361 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 109 256 - -
Amo14g3501 361 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 260 349 - -
Amo14g3501 361 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 106 - -
Amo14g3501 361 ProSiteProfiles B3 DNA-binding domain profile. 5 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3501 Amo-Chr14 138358644 138360638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3501 6 346 B3 DNA Binding Superfamily AT3G18990 25.278 2.15e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo14g3501 B3 5.7e-12 CL0405