Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3437 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCATGGAACACCAGTTTATTACTATTGCCCACCAACTTTGGAGGAGCGCGAGTTGTTAACCTCTAATGATGCTTCTGCTGCTTCACTCACTGCTGGGTTGCTGATTGGCTTAAACCTGGATGCGTCCACACCTGATACTTTCCAGCCGCCTCCTGCGCCTCTGCCTTATGATGTGGTCTTTGGAGGCTCTGCATCAACAGATTCTGAGTCTGGTAGAGAAACTGTTAGTGGTAGTAGTTTCGAGACTTTAATTGCACGAGAAGATCTCGAAGAAGCTGAAAGTAAAGTTAAAGCTCAAGAAAATTCTGAGCCTATATCTCCAAAGAAGGCAGAGCTATTAAAATCAAATCAGACTCAAGTATTACTGACAGAAGAAGAGGATGTTTGTCCAATTTGTCTCGAAGAATATGATGTTGAGAATCCCAAAAATCTGACGAAATGCGAGCACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGCCCAATATGTGATCAGGAAATGATATTTTGA 567 0.4339 MGGCCCSARKPHLHGTPVYYYCPPTLEERELLTSNDASAASLTAGLLIGLNLDASTPDTFQPPPAPLPYDVVFGGSASTDSESGRETVSGSSFETLIAREDLEEAESKVKAQENSEPISPKKAELLKSNQTQVLLTEEEDVCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3437 188 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 188 - -
Amo14g3437 188 SUPERFAMILY RING/U-box 135 186 - -
Amo14g3437 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 187 IPR013083 -
Amo14g3437 188 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 188 - -
Amo14g3437 188 Pfam Ring finger domain 141 182 IPR001841 -
Amo14g3437 188 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Amo14g3437 188 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3437 Amo-Chr14 137417425 137421455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3437 1 188 C3H Transcription Factor Family AT4G00335 54.787 3.93e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3437 - - gmx:100792561 322.398