Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3396 ATGGTGGAAGGTGGTGGAGGTGAGGTTTCGGTTTCGGATTCSGTTGATGAACTTTCAACAGAAGAATGGTTGTTGAATGCAGAGAAGCTTGTTCCTGAGGCAATTGATAARGCTAAAGAGGTTAAAGTGTTCCTGGGAAGATGGAAGATGATTGTTTCGAAACTCGAACAGATCCCTTCGCGGCTGTCGGATTTGTCGAGCCACCCGTGTTTCGGGAAGAATGCGCTTTGCAAGGAGCAGTTACAGGCAGTTACAAGGACTCTGAAGGAATCAATTGAATTGGCTGAGATTTGTTTGAAGGACAAGTTTGAAGGTAAGTTGAAGATGCAAAGTGACCTTGATTCATTAGCCGCCAAATTGGATTTGAATTTGAGGGATTGTGGCCTCCTCATCAAGACTGGTGTCCTCGGCGAGGTGGCCCGGCCAGAGGCGGATGCTGCCACGCATGGCAGCATCAAAGAATTGCTTGCTCGCCTCCAGATCGGGCATCTGGAGGCAAAGCATAGAGCATTGGATAGTCTTGTGGAAGCAATGAGGGAAGATGAGAAGAAAGTTTTGGCGGTTATGGGGAGAAGCAACATTGCTGCTTTGGTTCAGTTACTAACCGCCACTTCTCACAGGATAAGAGAGACGGCGGTTACAGTTATATGCTCGCTCGCGGAATCCGGTAGCTGTGAGAATTGGTTAGTTTCCGAAGGCGTTCTGCCGCCTCTTATAAGGCTGGTTGAGTCCGGTAGTTTTGTGGGAAAAGAGAAAGCTGTAATTTCTCTTCAGAGGCTGTCAATGTCGGCGGAAACAGCCCGCGCAATCGTCGGACACGGCGGCGTTAGGCCGTTGGTTGAGCTTTGTCAGACCGGGGATTCGGTGTCGCAATCCGCGGCTGCTTGTACACTGAAGAATATTTCGGCCGTTCCGGAGGTTAGACAAGCTTTGGCCGAAGAAGGCGTCGTTARAACAATAATCAATTTGCTTAACTGCGGAATTCTGTTGGGATCCAAAGAGTACGCGGCSGAGTGCYTGCAGAATCTAACTGCAAGCAACGAGAATCTTCGTAGGAATATAATAACAGAAGGTGGCGTTATGAGTCTTCTAGCGTATCTTGATGGTCCTTTGCCTCAAGAATCYGCMGTTGGCGCGTTGAGGAACTTGGTAGGATCTGTCCCRGAGGACACACTCGTTTCGCTCGGCTTCCTTCCAAGATTGTCTCACGTGCTGAAATCCGGTTCCCCGGGAGCTCAGCAGGCGGCCGCAGCCGCAATCTGCCGAGTTTCCAGCACACCGGAGATGAAAAAGCTAGTGGGCGAAGCCGGATGCATACCTCATCTGGTAAAGATGCTGGAGGCGAAATCAAGCAGCGGTAGGGAGGTGGCGGYGCAGGCGATGGCGAGCCTAATTAGCGTGTCGCGGAATCAGAGAGAAGTGAAGAAGGATGATAAGAGTGTTCCAAACTTGGTTCAGTTGCTTGATCCAAGTCCRCAGAACAGTGCAAAGAAATATGCAGTTTCATGCTTGGGATCRCTTTCTTCATGCAAGAAATGCAGGAAGCTTATGATCTCTTATGGCGCAATTGGGTATCTGAAGAAACTCACTGAGATGGATATTCCAGGTGCTAAGAAACTTCTTGAGAGATTGGAGAAAGGCAATTTTAGAAGCTTGTTTAGCAAGAAATAG 1671 0.4877 MVEGGGGEVSVSDSVDELSTEEWLLNAEKLVPEAIDKAKEVKVFLGRWKMIVSKLEQIPSRLSDLSSHPCFGKNALCKEQLQAVTRTLKESIELAEICLKDKFEGKLKMQSDLDSLAAKLDLNLRDCGLLIKTGVLGEVARPEADAATHGSIKELLARLQIGHLEAKHRALDSLVEAMREDEKKVLAVMGRSNIAALVQLLTATSHRIRETAVTVICSLAESGSCENWLVSEGVLPPLIRLVESGSFVGKEKAVISLQRLSMSAETARAIVGHGGVRPLVELCQTGDSVSQSAAACTLKNISAVPEVRQALAEEGVVXTIINLLNCGILLGSKEYAAECLQNLTASNENLRRNIITEGGVMSLLAYLDGPLPQESAVGALRNLVGSVPEDTLVSLGFLPRLSHVLKSGSPGAQQAAAAAICRVSSTPEMKKLVGEAGCIPHLVKMLEAKSSSGREVAXQAMASLISVSRNQREVKKDDKSVPNLVQLLDPSPQNSAKKYAVSCLGSLSSCKKCRKLMISYGAIGYLKKLTEMDIPGAKKLLERLEKGNFRSLFSKK* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3396 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 556 - -
Amo14g3396 556 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 556 - -
Amo14g3396 556 Gene3D - 147 330 IPR011989 -
Amo14g3396 556 SMART arm_5 468 509 IPR000225 GO:0005515
Amo14g3396 556 SMART arm_5 386 425 IPR000225 GO:0005515
Amo14g3396 556 SMART arm_5 181 221 IPR000225 GO:0005515
Amo14g3396 556 SMART arm_5 346 385 IPR000225 GO:0005515
Amo14g3396 556 SMART arm_5 426 466 IPR000225 GO:0005515
Amo14g3396 556 SMART arm_5 304 345 IPR000225 GO:0005515
Amo14g3396 556 SMART arm_5 263 303 IPR000225 GO:0005515
Amo14g3396 556 Gene3D - 331 545 IPR011989 -
Amo14g3396 556 SUPERFAMILY ARM repeat 149 533 IPR016024 -
Amo14g3396 556 Pfam Armadillo/beta-catenin-like repeat 267 303 IPR000225 GO:0005515
Amo14g3396 556 Pfam Armadillo/beta-catenin-like repeat 426 460 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3396 Amo-Chr14 136505548 136509130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3396 202 475 U-box Gene Family AT3G54790 30.108 7.06e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3396 - - gmx:100789140 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3396 14 136505548 136509130 Amo14g3396 14 136505548 136509130 ECH
Amo14g3396 14 136505548 136509130 Amo04g2985 04 105540864 105544883 hybridization
Amo14g3396 14 136505548 136509130 Amo12g2986 12 117327923 117331866 PCT
Amo12g2986 12 117327923 117331866 Amo14g3396 14 136505548 136509130 PCT