Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3346 ATGGGGAGGAGACCTGCTAGGTGTTATCGACAAATTAAAAACAAGCCATACCCCAAGTCACGGTTTTGCCGTGGTGTTCCTGATCCCAAGATCAGGATTTACGATGTGGGTATGAAGAAGAAGGGTGTGGATGAGTTCCCTTTCTGTGTCCACCTTGTTAGTTGGGAGAAGGAAAATGTKTCAAGTGAGGCACTGGAAGCTGCTAGGATTGCCTGCAACAAGTATATGGCAAAGTTTGCCGGAAAGGATGCTTTCCACTTGAGAGTCAGGGTTCATCCATTCCATGTTCTTAGGATCAACAAGATGCTTTCATGTGCTGGAGCCGATAGGCTTCAAACTGGAATGAGAGGTGCATTTGGAAAGCCACAGGGWACATGTGCRAGGGTGGCCATTGGGCAGGTCCTTCTTTCTGTTCGCTGCAAGGACAGCAACAGCCATCATGCACAGGAGGCTCTCCGTCGTGCTAAGTTCAAGTTCCCTGGTCGTCAAAAGATTATTATCAGCAGGAAGTGGGGATTCACCAAGTTTAGCCGAGCTGATTATCTGAAATTCAAGTCAGAGAATAGGATTATGCCCGATGGTGTAAATGCACAGCTCCTTGGGTGCCATGGACCATTGGCTAATCGTCAACCTGGAAGAGCATTTTTGCCGCCCAGTGCAACCGCTTAG 669 0.4813 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIISRKWGFTKFSRADYLKFKSENRIMPDGVNAQLLGCHGPLANRQPGRAFLPPSATA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3346 222 Gene3D Ribosomal protein L10e/L16 1 215 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 216 - -
Amo14g3346 222 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 PANTHER 60S RIBOSOMAL PROTEIN L10 1 216 IPR001197 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Amo14g3346 222 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3346 Amo-Chr14 135647807 135650172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3346 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.455 2.65e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3346 K02866 - gmx:100305619 444.891