Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3306 ATGTACAGCACCACTCTCATCCCTGCTTCTAGTTCTGGTCTTGCTTTCGCCTCACCGATTCAGAGAACCCACCGAAAGCAGCACCACCATGTTCGTTGGCATTGCTCGTCGCTTTCTGCTGCAAGCGGCACCGCTACTCAAGTCTCAACCGTTCCATGGGGCTGCGATAGTGATTCCTTGGAGAACGCATCGGCGTTGCAGAAGTGGCTGTCAGAGTCAGGGCTTCCACCGCAGAAGATGAGCATACAGAGAGTTGAGGTCGGAGAGAGGGGCCTAGTTGCCTCAAAGAATATAAGGAAAGGAGAGAAGCTCCTCTTCGTCCCTCCCACGCTCGTTATCACCGAAGATTCCGAGTGGACCTGCCCCGAAGCTGGTGCAATTTTGAAAAAGAATTCGGTGCCGGATTGGCCATTGCTTGCAACTTATCTCATAAGTGAAGCCAGCTTCATGAAATCTTCAAGATGGAGTAACTATATATCAGCCCTACCTCGCCAGCCTTATTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTATTTGGAAGCTTCACAAATTAGGGAGAGAGCAGTTGACAGGATTAATAATGTCATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAACACCCCGATTTGTTCCCTGAAGAGTTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGCATTCTCTTTTCTCGTTTGGTTCGGTTACCCTCAATGGACGGAAGGGTTGCCTTGGTTCCTTGGGCAGATATGTTGAATCATAGTTGTGASGTGGATACCTTTTTGGATTATGATAATTTATCAAAGGGAATTGTCTTTACTACAGATCGGCCGTATCAACCAGGTGAGCAGGTGTTCATTTCATATGTGAAAAAAATCAAATGGGGAGCTTCTATATCGTATGGGTTTGTTCCAAGGGAAGGCGCCAATCCTTGTGATTCAGTTGAGTTGTCAGTGTCACTCAAGAAATCTGATAAATCCTACAAGGAGAAATTAGAACTCTTGAAGAAGTATGGATTATCAGGATCTCAATGTTTTCCAATACAGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGAGCGCAATTTGAAGAGATGGCTGCGGCAGCATCGAATAAAACTACCATCAAGAAAGATTCAAGATATCCTGAAATAGAGGAGCAAGCATTGCAGTTCATACTTGACAGTTGTGAATCCAGTATATCGAAATACAACAATTTCTTACAGGCAAGTGGATCTCTGGATTTAGATGTAACTTCTCCGAAACAACTCAACCGTAGACTTTTTCTGAAACAGCTCGCGGTGGACTTGTGTACAAGTGAGCGAAGGATATTATTTCGTACTCAATATATACTGAGAAGAAGACTGAGGGATATGAGGGCTGGTGAATTAAGAGCTTTAAAAATCTTTGATGGGCTCCGAAATCTTTTCCAATGA 1482 0.4366 MYSTTLIPASSSGLAFASPIQRTHRKQHHHVRWHCSSLSAASGTATQVSTVPWGCDSDSLENASALQKWLSESGLPPQKMSIQRVEVGERGLVASKNIRKGEKLLFVPPTLVITEDSEWTCPEAGAILKKNSVPDWPLLATYLISEASFMKSSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAVDRINNVIGTYNDLRLRIFSKHPDLFPEELFNIESFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCXVDTFLDYDNLSKGIVFTTDRPYQPGEQVFISYVKKIKWGASISYGFVPREGANPCDSVELSVSLKKSDKSYKEKLELLKKYGLSGSQCFPIQITGWPLELMAYAYLAVSPSSMRAQFEEMAAAASNKTTIKKDSRYPEIEEQALQFILDSCESSISKYNNFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRTQYILRRRLRDMRAGELRALKIFDGLRNLFQ* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3306 493 Gene3D - 313 482 IPR036464 -
Amo14g3306 493 PIRSF RMT_SET 3 490 IPR011192 GO:0009507|GO:0030785
Amo14g3306 493 Gene3D set domain protein methyltransferase, domain 1 15 307 - -
Amo14g3306 493 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 324 489 IPR036464 -
Amo14g3306 493 Pfam SET domain 90 293 IPR001214 GO:0005515
Amo14g3306 493 CDD SET_RBCMT 77 308 IPR044431 GO:0016279|GO:0018022
Amo14g3306 493 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 23 288 - -
Amo14g3306 493 Pfam Rubisco LSMT substrate-binding 327 460 IPR015353 -
Amo14g3306 493 ProSiteProfiles SET domain profile. 78 294 IPR001214 GO:0005515
Amo14g3306 493 PANTHER - 23 288 - -
Amo14g3306 493 SMART set_7 78 300 IPR001214 GO:0005515
Amo14g3306 493 SUPERFAMILY SET domain 62 309 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3306 Amo-Chr14 134414472 134419019 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo14g3306 SET 2.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3306 - - gmx:100803319 776.548