Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo14g3295 | ATGGTGGTGGTGGGACTGGCCATCACTCTCTCAAAGGCCTTCACTGATTTCTCCTTGGCACACTACTCCCTCCATCACCACCACCACCACCGCCTCTCCTCTCAGCAACAAGACATCGGCATCACAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCCGAGTTTCGAAAGACTGAAAACTCAGAAAGTCAAAGCTCTCGTCCACAGGTCTAAGCAGCACAGAAACAGAAGCACTGACGATGGTCGACCACGTGATTCATCGCCAAACCCTCGTTCAAGAGGAGGATGGGGGGACGCTGGAGGATCCTTCCGTTCTCTTAATTCTCAGGAGCTTGCTCCCGACACCAGCTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTAGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGTTGTTTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTGTTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGGCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTAGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATCAAGGCTTGCCAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACTGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTTGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGCGCCAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCACCCGTTACATGATGTCCCTTCTGCTGTTACCTTCTAG | 1584 | 0.4596 | MVVVGLAITLSKAFTDFSLAHYSLHHHHHHRLSSQQQDIGITTSIDSSSSSISPSFERLKTQKVKALVHRSKQHRNRSTDDGRPRDSSPNPRSRGGWGDAGGSFRSLNSQELAPDTSFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAVTF* | 528 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo14g3295 | 527 | MobiDBLite | consensus disorder prediction | 63 | 108 | - | - | |
Amo14g3295 | 527 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 44 | 524 | - | - | |
Amo14g3295 | 527 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 369 | 527 | IPR001650 | - | |
Amo14g3295 | 527 | MobiDBLite | consensus disorder prediction | 73 | 88 | - | - | |
Amo14g3295 | 527 | Pfam | DEAD/DEAH box helicase | 147 | 320 | IPR011545 | GO:0003676|GO:0005524 | |
Amo14g3295 | 527 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 122 | 150 | IPR014014 | GO:0003724 | |
Amo14g3295 | 527 | SMART | helicmild6 | 397 | 487 | IPR001650 | - | |
Amo14g3295 | 527 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 153 | 334 | IPR014001 | - | |
Amo14g3295 | 527 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 157 | 498 | IPR027417 | - | |
Amo14g3295 | 527 | Gene3D | - | 343 | 519 | IPR027417 | - | |
Amo14g3295 | 527 | Pfam | Helicase conserved C-terminal domain | 370 | 486 | IPR001650 | - | |
Amo14g3295 | 527 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 44 | 524 | - | - | |
Amo14g3295 | 527 | SMART | ultradead3 | 141 | 349 | IPR014001 | - | |
Amo14g3295 | 527 | CDD | SF2_C_DEAD | 346 | 497 | - | - | |
Amo14g3295 | 527 | CDD | DEADc | 133 | 320 | - | - | |
Amo14g3295 | 527 | Gene3D | - | 105 | 334 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo14g3295 | Amo-Chr14 | 134302856 | 134308605 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo14g3295 | 116 | 495 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 27.749 | 1.17e-30 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo14g3295 | K13179 | - | gmx:100784377 | 720.694 |