Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3295 ATGGTGGTGGTGGGACTGGCCATCACTCTCTCAAAGGCCTTCACTGATTTCTCCTTGGCACACTACTCCCTCCATCACCACCACCACCACCGCCTCTCCTCTCAGCAACAAGACATCGGCATCACAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCCGAGTTTCGAAAGACTGAAAACTCAGAAAGTCAAAGCTCTCGTCCACAGGTCTAAGCAGCACAGAAACAGAAGCACTGACGATGGTCGACCACGTGATTCATCGCCAAACCCTCGTTCAAGAGGAGGATGGGGGGACGCTGGAGGATCCTTCCGTTCTCTTAATTCTCAGGAGCTTGCTCCCGACACCAGCTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTAGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGTTGTTTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTGTTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGGCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTAGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATCAAGGCTTGCCAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACTGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTTGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGCGCCAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCACCCGTTACATGATGTCCCTTCTGCTGTTACCTTCTAG 1584 0.4596 MVVVGLAITLSKAFTDFSLAHYSLHHHHHHRLSSQQQDIGITTSIDSSSSSISPSFERLKTQKVKALVHRSKQHRNRSTDDGRPRDSSPNPRSRGGWGDAGGSFRSLNSQELAPDTSFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAVTF* 528
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3295 527 MobiDBLite consensus disorder prediction 63 108 - -
Amo14g3295 527 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 524 - -
Amo14g3295 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 527 IPR001650 -
Amo14g3295 527 MobiDBLite consensus disorder prediction 73 88 - -
Amo14g3295 527 Pfam DEAD/DEAH box helicase 147 320 IPR011545 GO:0003676|GO:0005524
Amo14g3295 527 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Amo14g3295 527 SMART helicmild6 397 487 IPR001650 -
Amo14g3295 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 334 IPR014001 -
Amo14g3295 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 498 IPR027417 -
Amo14g3295 527 Gene3D - 343 519 IPR027417 -
Amo14g3295 527 Pfam Helicase conserved C-terminal domain 370 486 IPR001650 -
Amo14g3295 527 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 524 - -
Amo14g3295 527 SMART ultradead3 141 349 IPR014001 -
Amo14g3295 527 CDD SF2_C_DEAD 346 497 - -
Amo14g3295 527 CDD DEADc 133 320 - -
Amo14g3295 527 Gene3D - 105 334 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Amo14g3295 Amo-Chr14 134302856 134308605 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3295 116 495 Eukaryotic Initiation Factors Gene Family AT3G13920 27.749 1.17e-30 122
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3295 K13179 - gmx:100784377 720.694