Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3202 ATGAAAGAGCAAAAGCTAACTTCCAACCCTGCTACGACATTTGCACATTTGGATGCTACGACCGTACTATCAAGAGGATTGGCTGCCAAAGGTATCTATCCAGCTGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATTGTTGGTGAAGAACATTATGAAACTGCACAAAGAGTTAAACAAACTTTACAGCAATACCGAGTCGGGTTCTTCTCCTACATGTATCGAATAGAACATGCTGAGACATATGATATATCGAGAGTTCAAGACCATAACCCATATTTCGACCCGGACGTTTACGGGATGCCCCTAATAACCAACGAATGGCAAGCTTTGATCAATAACATTGCCAAAACTCATGGCGGTGTATCCGTATTTGGCGGAGTGGGGGAGCGTACTCGTGAGAGAAATGATATTTACATGGAAATGAAAGAATCTGGAGTAATTAATGAAAAAATTATTGGAGAATCAAAAGTTGCTCTAGTGTACGGTCAAATGAATGAACCGCCTAGAGCACGTATGAGAGTTGGTTTAACTGCCCTAAACATGGCGGAATATTTCAGAGATGTTAATGAACTAGACGTGCTTCTATTTATCGACAATATCTTCCGATTCGTCCAAGCGGGATCCGAAGTGTCAGCCTTATTGGGTCGAATGCCTTCCGCTGTAGGTTATCAACCGACCCTTAGTACCGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCTATAACTTCTATTCAAGCAGTTTATGTACCCACAGATGATTTGACCGACCCTGCTCCTGCTACGACATTTGCACATTTGGATGCTACGACCGTACTATCAAGAGGATTGGCTGCCAAAGGTATCTATCCAGCTGTAGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCAGATTGTTGGTGAAGAACATTATGAAACTGCGCAAAGAGTTAAACAAACTTTACAGCATTACAAAGAACTTCAGGACATTATAGCTAGCCTTGGGTTGGAAGAATTATCCGAAGAGGATCGCTTAACTGTAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAGCCTTTTTTCGTAGTAGAAGTATTTACCAGTTCGCCAGGAAAATATGTAGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGACGTGAAGGAAATTATTTTGTCCACTAATAGTGGACAAATTGGAGTATTACCAAATCATGCACCTATTGCTACAGCTGTAGATATAGGTATCTTGAGAATACGCCTTAATGACCAATGGGTAACAATGGCTCTGATGGGTGGTTTTGCTAGAATATGCAATAATAAGATCACCATTTTAGTAAAGGATACCGAGAAGAGTAGTGACATTGATCCAGAAGAAGCTAAACAAACTCTTGAAATAGCAGAAGCTAACTTGAGTAAAGCTGAAGGCAAGAGACAACTAATCGAGGCAAATCTATCACTAGCATAA 1500 0.404 MKEQKLTSNPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQQYRVGFFSYMYRIEHAETYDISRVQDHNPYFDPDVYGMPLITNEWQALINNIAKTHGGVSVFGGVGERTRERNDIYMEMKESGVINEKIIGESKVALVYGQMNEPPRARMRVGLTALNMAEYFRDVNELDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPTDDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYETAQRVKQTLQHYKELQDIIASLGLEELSEEDRLTVARARKIERFLSQPFFVVEVFTSSPGKYVGLAETIRGFKLILSGELDVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWVTMALMGGFARICNNKITILVKDTEKSSDIDPEEAKQTLEIAEANLSKAEGKRQLIEANLSLA* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3202 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 47 IPR027417 -
Amo14g3202 499 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 115 302 IPR000194 GO:0005524
Amo14g3202 499 Gene3D - 107 390 - -
Amo14g3202 499 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 397 498 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo14g3202 499 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 392 460 IPR036771 -
Amo14g3202 499 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 305 397 - -
Amo14g3202 499 ProSitePatterns ATP synthase alpha and beta subunits signature. 293 302 IPR020003 GO:0005524
Amo14g3202 499 Gene3D - 391 466 IPR036771 -
Amo14g3202 499 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 114 398 - -
Amo14g3202 499 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 8 70 - -
Amo14g3202 499 ProSitePatterns ATP synthase alpha and beta subunits signature. 34 43 IPR020003 GO:0005524
Amo14g3202 499 Gene3D - 1 86 IPR027417 -
Amo14g3202 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 307 IPR027417 -
Amo14g3202 499 CDD ATP-synt_F1_beta_C 309 397 - -
Amo14g3202 499 Hamap ATP synthase epsilon chain [atpC]. 378 498 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo14g3202 499 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 392 458 IPR020546 GO:0015986
Amo14g3202 499 Gene3D - 468 499 - -
Amo14g3202 499 TIGRFAM atpD: ATP synthase F1, beta subunit 113 397 IPR005722 GO:0015986|GO:0045261|GO:0046933
Amo14g3202 499 PANTHER ATP SYNTHASE 114 398 - -
Amo14g3202 499 CDD F1-ATPase_delta 389 499 IPR001469 GO:0015986|GO:0045261|GO:0046933
Amo14g3202 499 PANTHER ATP SYNTHASE 8 70 - -
Amo14g3202 499 Coils Coil 475 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3202 Amo-Chr14 132562708 132566243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3202 128 366 Primary Pumps ATPases(2) AT1G78900 28.295 1.73e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3202 K02112 - csin:114305725 667.922