Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3201 ATGGAGGGAGGTGATGACTTCCACCACCATCACCATCATCACCAACACCACCACCACCGACAGAACTTCCCCTTCCAACTTCTAGAGAAGAAAGAAGATCAAGAAGCAGCGTCGTGCTCAACTTCCTCCCCTTACCCTTCCCTAGCTATCTCATCTGCAGAACCATCCACTTCAAATTCAAACCGATCCAATCCAAACAGCAACACTGCAAACAACAACAATAACAACAGCAACAACAACCAATTAGCCTTACAACAAGAACAGCAAATACAGCCTTCTTTATCCTCTGAACCTTCTGGAAAGAAGCCTCCTCCTAAGCGGACATCCACCAAGGACCGCCATACAAAAGTCGATGGCCGTGGCCGCCGCATCCGAATGCCAGCTCTCTGTGCAGCCAGAGTGTTCCAGCTGACACGAGAGCTCGGCCACAAGTCCGATGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCCGTGATCGCCGCCACCGGAACCGGAACAATCCCCGCAAACTTCACGTCCCTCAACATCTCCCTCCGCAGCAGCGGTTCCTCCATGTCCGTACCATCCCAGCTCCGATCCTCATACTTCAGCCCTAACTTCCCCCTCCAAAACCGCCGAACCTTGTTCCCCGGAATAACCCTCTCGTCCGACACCACCACCGCCAGTAACAACAACAACAGCAACAACAACACCACCACTCTCCTTAACTTCCAACAGCAACAGCAAACCCTAACCGCAAATATTTTCAAGCAAGAACTGAGAGAGAGCCATGGCGCTCCCTCTTCTTCTTCCACGTTGGATTTATCTGAAACAAGCGCGGAAGAAGGTTCGTTAGGGAGAAAGAGAAGGCCGCCATCGGAACACGACCTATCTTCTTCAGCACAGCACCAAATGGGAAGCTACCTGCTGCAATCAAGCGCAGGCGCGATTCAGGCGAGCCACGCAGCTCAGATTCCGGCCAACATATGGATGGTGGCGAATTCCCAAAATGCCCCTCAGGTTATGAGCGGTGACCCTATATGGACGTTTCCAACGCAGGTTAGTAACAGTGGGTTGTACCGTGGAACCGTTTCCAGTGGTTTGCACTTTATGAACTTCCCTACTCCTATGGCTTTGTTGCCGAGTCAGCAATTAGGTTCTTCCGGTGGCGGAGGCAGTGTCAACGAAAGCCATTTGAATATGATCGCCGGTCTCGGCAGTTACCGTCCGGTCATCGGAGTTTCAGAATCGTCTCAGGCCAGTGGCTCTCATCAACATCATCGAGATGGAACCGATGATCGACACGATAGTACCAGCCACCACTCTTGA 1317 0.5254 MEGGDDFHHHHHHHQHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISSAEPSTSNSNRSNPNSNTANNNNNNSNNNQLALQQEQQIQPSLSSEPSGKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFSPNFPLQNRRTLFPGITLSSDTTTASNNNNSNNNTTTLLNFQQQQQTLTANIFKQELRESHGAPSSSSTLDLSETSAEEGSLGRKRRPPSEHDLSSSAQHQMGSYLLQSSAGAIQASHAAQIPANIWMVANSQNAPQVMSGDPIWTFPTQVSNSGLYRGTVSSGLHFMNFPTPMALLPSQQLGSSGGGGSVNESHLNMIAGLGSYRPVIGVSESSQASGSHQHHRDGTDDRHDSTSHHS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3201 438 ProSiteProfiles TCP domain profile. 110 164 IPR017887 -
Amo14g3201 438 MobiDBLite consensus disorder prediction 104 123 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 257 275 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 1 124 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 411 438 - -
Amo14g3201 438 Pfam TCP family transcription factor 108 248 IPR017887 -
Amo14g3201 438 MobiDBLite consensus disorder prediction 277 292 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 216 235 - -
Amo14g3201 438 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 438 IPR005333 GO:0003700
Amo14g3201 438 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 438 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 22 36 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 418 438 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 257 298 - -
Amo14g3201 438 MobiDBLite consensus disorder prediction 37 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3201 Amo-Chr14 132420653 132422738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3201 95 380 TCP Transcription Factor Family AT3G47620 47.851 7.38e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Amo14g3201 TCP 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3201 - - pvu:PHAVU_003G190900g 471.855