Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3144 ATGGAAAAAAGAAAGAAACGTGGTGGTCGTGCGGAAAGGGTAACACGGATGTCTGCGAATTCTGAGAATGTTGGGGTTTGTTCTCTTTGCCAGAAGGCATTATCTCCTGATAATGAGATGACAAGTGATCCTGCGACAGTTGGTGTATGCGGTGATTGTAAATTTTTATTGCTTGAGGACTATGGGAATCATATGGTTACCCCTCAGAGCTTGCAAAGAAGGTTCAGAGGCCGGTTCAGGCGCAACAGCTCTGAGTCTGTTGACAACATGGTTAATAATTTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAATTGTGGAGGGGGATGCCGCTGCTTGGGCGACGCAGCATGCTAGTTTACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGTGATGGTTTCGATAATTGGAGCTCACTTTACGGTGAAAATGAATCAAATGAGAGCTTTAGACGGTATAGGATTCCTCATGGTGAGACTGATTCCCTCTCTTTCAGTGCTTATGGAGGTGACTCAGATGTCTCCGTGGATAGACATAGTATTATACATAGAGGAATGTTTGGTTTACCAGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCCGAAGCGGAAGCCACAGCTCGCCTTCAAATGTTTTTCACCTCAAATTCGAGTGCAAGTAGGGGTAGCAATGTTCGGGTACAAAGGTTTGATTCCGCTGAATCTGAGGTGGTCCAAATGGTCAGTAGCTGGGGAGCTGACTTGGAGGATACTGGCTTACATCCCTATGGTGCCAACTTTGGGGACTATCTCGATGCTAGACAATTCGAAGATTTTCTTGAGCATCTTGCTGAGAATGACAATTCGAGACGAGGAGCACCTCCTGCATCTTTGTCATTTGTGAACAATCTGCCCCGCGTAGTCGTTGACAAGGACCATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGCATTGGTACTTGGGACTGAAGCTAGTCAGCTTCCYTGCTCTCACCTTTATCATGGAAGTTGCATTTTACCGTGGTTGAGCACACGGAATTCATGTCCTCTCTGCCGCCATGAGCTTCCAACTGATGACAAAGATTACGAAGAGGGAAAGCAGAARGGTGTTCTTCYACATGTAAACCATGACAGGCAGCAACTAGAGATGGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGAAGTAAACGAAGCAGATAGTATTAGTCAAAGTGTAATACATCATACAGAAGTTGTAAGTTCGAATTCTTCCACAAATTCTTCGGCAGTAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCCGCGGCTCCAATAGTTAGTTTAGTTGGCATTGTGCTTGTCCTGTGGTTAGGTAACTCACAGATTGAAGGGAATAGGCATCTCAGCGGGCGCAACATGTCCGCACAAGATCATCATACCACCAATGTTTATGCCACACCCGTCCAAAGGGAGAGCAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1563 0.4587 MEKRKKRGGRAERVTRMSANSENVGVCSLCQKALSPDNEMTSDPATVGVCGDCKFLLLEDYGNHMVTPQSLQRRFRGRFRRNSSESVDNMVNNLRQSRSATASLEDVQQIVEGDAAAWATQHASLHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRRYRIPHGETDSLSFSAYGGDSDVSVDRHSIIHRGMFGLPDVGDEFDSDTDIDPMHAEAEATARLQMFFTSNSSASRGSNVRVQRFDSAESEVVQMVSSWGADLEDTGLHPYGANFGDYLDARQFEDFLEHLAENDNSRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVLGTEASQLPCSHLYHGSCILPWLSTRNSCPLCRHELPTDDKDYEEGKQKGVLXHVNHDRQQLEMVDVDDSSSDVSVLAEVNEADSISQSVIHHTEVVSSNSSTNSSAVRGGRGRWFFLAAAPIVSLVGIVLVLWLGNSQIEGNRHLSGRNMSAQDHHTTNVYATPVQRESRSRRWWCPF* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3144 520 SUPERFAMILY RING/U-box 315 380 - -
Amo14g3144 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 380 IPR013083 -
Amo14g3144 520 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Amo14g3144 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 269 439 - -
Amo14g3144 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 269 439 - -
Amo14g3144 520 SMART ring_2 333 373 IPR001841 -
Amo14g3144 520 Pfam Ring finger domain 333 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3144 Amo-Chr14 130703787 130706328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3144 17 520 C3H Transcription Factor Family AT5G01980 39.383 6.17e-104 318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3144 14 130703787 130706328 Amo14g3144 14 130703787 130706328 ECH