Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3142 ATGGAAAAAAGAAAGAAACGTGGTGGTCGTGCGGAAAGGGTAACACGGATGTCTGCGAATTCTGAGAATGTTGGGGTTTGTTCTCTTTGCCAGAAGGCATTATCTCCTGATAATGAGATGACAAGTGATCCTGCGACAGTTGGTGTATGCGGTGATTGTAAATTTTTATTGCTTGAGGACTATGGGAATCATATGGTTACCCCTCAGAGCTTGCAAAGAAGGTTCAGAGGCCGGTTCAGGCGCAACAGCTCTGAGTCTGTTGACAACATGGTTAATAATTTGAGGCAAAGCAGATCTGCGACTGCTTCTTTGGAGGACGTTCAACAAATTGTGGAGGGGGATGCCGCTGCTTGGGCGACGCAGCATGCTAGTTTACATAATACCCCTAGTGGTTCTAGGAGATGGAGGCGGGTTCTCTCTGATACCGACAGTGATGGTTTCGATAATTGGAGCTCACTTTACGGTGAAAATGAATCAAATGAGAGCTTTAGACGGTATAGGATTCCTCATGGTGAGACTGATTCCCTCTCTTTCAGTGCTTATGGAGGTGACTCAGATGTCTCCGTGGATAGACATAGTATTATACATAGAGGAATGTTTGGTTTACCAGATGTGGGAGATGAGTTTGATAGTGACACCGATATAGATCCAATGCATGCCGAAGCGGAAGCCACAGCTCGGCTTCAAATGTTTTTCACCTCAAATTCGAGTGCAAGTAGGGGTAGCAATGTACGGGTACAAAGGTTTGATTCCGCTGAATCTGAGGTGGTCCAAATGGTCAGTAACTGGGGAGCTGACTTGGAGGATACTGGCTTACATCCCTATGGTGCCAACTTTGGGGACTATCTCGATGCTAGACAATTCGAAGATTTTCTTGAGCATCTTGCTGAGAATGACAATTCGAGACGAGGAGCACCTCCTGCATCTTTGTCATTTGTGAACAATCTTCCCCGCGTAGTCGTTGACAAGGACCATGAGAAGCATGGTGAACTAGTTTGTGCCATTTGCAAGGATGCATTGGTACTTGGGACTGAAGCTAGTCAGCTTCCATGCTCTCACCTTTATCATGGAAGTTGCATTTTACCGTGGTTGAGCACACGGAATTCATGTCCTCTCTGTCGCTATGAGCTTCCAACTGATGACAAAGATTACGAAGAGGGAAAGCAGAATGGTGTTCTTCAACATGTAAACCATGACAGGCAGCAACTAGAGATGGTGGATGTGGATGATAGTTCCTCTGATGTCTCTGTCTTGGCTGAAGTAAACGAAGCAGATAGTATTAGTCAAAGTGTAATACATCATACAGAAGTTGTAAGTTCGAATTCTTCCACAAATTCTTCGGCGGTAAGAGGTGGTAGAGGAAGATGGTTTTTTCTTGCCGCGGCTCCAATAGTTAGTTTAGTTGGCATTGTGCTTGTCCTGTGGTTAGGTAACTCACAGATTGAAGGGAATAGGCATCTCAGCGGGCGCAACATGTCCGCACAAGATCATCATACCACCAATGTTTATGCCACACCCGTCCAAAGGGAGAGCAGAAGCAGAAGATGGTGGTGCCCTTTCTAA 1563 0.4568 MEKRKKRGGRAERVTRMSANSENVGVCSLCQKALSPDNEMTSDPATVGVCGDCKFLLLEDYGNHMVTPQSLQRRFRGRFRRNSSESVDNMVNNLRQSRSATASLEDVQQIVEGDAAAWATQHASLHNTPSGSRRWRRVLSDTDSDGFDNWSSLYGENESNESFRRYRIPHGETDSLSFSAYGGDSDVSVDRHSIIHRGMFGLPDVGDEFDSDTDIDPMHAEAEATARLQMFFTSNSSASRGSNVRVQRFDSAESEVVQMVSNWGADLEDTGLHPYGANFGDYLDARQFEDFLEHLAENDNSRRGAPPASLSFVNNLPRVVVDKDHEKHGELVCAICKDALVLGTEASQLPCSHLYHGSCILPWLSTRNSCPLCRYELPTDDKDYEEGKQNGVLQHVNHDRQQLEMVDVDDSSSDVSVLAEVNEADSISQSVIHHTEVVSSNSSTNSSAVRGGRGRWFFLAAAPIVSLVGIVLVLWLGNSQIEGNRHLSGRNMSAQDHHTTNVYATPVQRESRSRRWWCPF* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3142 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 258 440 - -
Amo14g3142 520 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Amo14g3142 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 380 IPR013083 -
Amo14g3142 520 SUPERFAMILY RING/U-box 315 380 - -
Amo14g3142 520 SMART ring_2 333 373 IPR001841 -
Amo14g3142 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 258 440 - -
Amo14g3142 520 Pfam Ring finger domain 333 374 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3142 Amo-Chr14 130605530 130608077 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3142 17 520 C3H Transcription Factor Family AT5G01980 39.746 3.54e-106 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3142 - - gmx:100800933 635.18