Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3044 ATGTATCGATTAGCTTCCAAGCTAGCCTCCTCCATCACTTCGTCGACCTCATGGAGCGTTATACACTGCGTGGTTATTTCAAGTAGAAACTATACGAGCAAAGACATCAACTTTGGCGTTGGAGCTCGTGCTACAATTCTTCAGAGTGTCACTAAGGTTGCTAATGCTGTCAAAGTTACCATGGGACCCAAGGGTCGTAATGTAATTATTGAGAAAAGTTATAGGAACCCAAGGATCACAAATGATGGTGTGACAGTAGCTAAGAGTATCAAATTTCAGGATAAGGCTAAGAACATTGGTGCTGATCTTGTTAAGCAGGTTGCCAAGGCTACCAACACTGCTGTTGGAGATGGTACAACTTGTGCGACTGTGTTAAGTCAGGCAATACTGACAGAAGGTTGCAAATCGATCGCAGCTGGTGTAAATGTCATGGATTTGCGTAATGGAATAAATAAGGCAGTTGATGCTGTAATTACTGATTTGAAAAGCAGGGCAGTAATGATAAGCACACCTGAAGAGATAACCCAGATTATGTTTGTAGAGCAACTAGAATTACTATTGTGGCTGAAAAAGAAAATTAAGATGCATTCAAACAATGGACGGAAGGTCAAGATAGGAGTTGGAGTTGGAGTCTCAGTTGGCGTATTATGTGGCCTTCTCTTAGCATTCTGTTTGATATGGAAAAGACGAAAAATGGCCACTCTAAAAGAGACTAATGCAGCATTAAAGGATCAGTCCAAGAAAGAACAAGAGGAAGATCCAGAGGTTCCATTATATGACCTATCAGTTATAGCTTCTTCCACTAATAACTTTTCACACAAAAATAAGCTTGGAGAAGGAACATTAGAAAATGGGCAAAGAATTGCAGTTAAAAGACTTTCAGCTAGTTCCGGACAAGAGATCAAGGAATTTAAGAATGAAATTGCCTTGATAGCCAAACTTCAGCATCGTAATCTTTTAAATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGCAAATACAAAATACTGAGAAGTCTTTTCCCAAGCCCCACAAAGATGGATAGAGCCTTTGTGGTGGGTGATGCCATTGAATATAGCAATGGAATATATCGTATTGGTCTAACGCATTACAGTGAGGGTAGCACTTGCTTGATCTTCATTCCATTCATAAAATGGTTCAAAATCTTGATAAACACGATTATTGATAACTTGGAACAAAGATTTTACAAGAATTTACGTAATGAAAACTTGGCTTCAGAGAATGTTGTCTTATGTATATATAAA 1272 0.3852 MYRLASKLASSITSSTSWSVIHCVVISSRNYTSKDINFGVGARATILQSVTKVANAVKVTMGPKGRNVIIEKSYRNPRITNDGVTVAKSIKFQDKAKNIGADLVKQVAKATNTAVGDGTTCATVLSQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRAVMISTPEEITQIMFVEQLELLLWLKKKIKMHSNNGRKVKIGVGVGVSVGVLCGLLLAFCLIWKRRKMATLKETNAALKDQSKKEQEEDPEVPLYDLSVIASSTNNFSHKNKLGEGTLENGQRIAVKRLSASSGQEIKEFKNEIALIAKLQHRNLLNFATEKQRREQLNGKYKILRSLFPSPTKMDRAFVVGDAIEYSNGIYRIGLTHYSEGSTCLIFIPFIKWFKILINTIIDNLEQRFYKNLRNENLASENVVLCIYK 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3044 424 Pfam TCP-1/cpn60 chaperonin family 53 176 IPR002423 GO:0005524
Amo14g3044 424 Gene3D - 31 207 IPR027413 -
Amo14g3044 424 Gene3D Phosphorylase Kinase; domain 1 244 326 - -
Amo14g3044 424 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 19 178 - -
Amo14g3044 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 361 IPR036638 GO:0046983
Amo14g3044 424 PRINTS 60kDa chaperonin signature 113 140 IPR001844 GO:0042026|GO:0140662
Amo14g3044 424 PRINTS 60kDa chaperonin signature 57 83 IPR001844 GO:0042026|GO:0140662
Amo14g3044 424 SUPERFAMILY GroEL equatorial domain-like 33 161 IPR027413 -
Amo14g3044 424 Gene3D - 327 371 IPR036638 GO:0046983
Amo14g3044 424 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL-LIKE 19 178 - -
Amo14g3044 424 Coils Coil 232 252 - -
Amo14g3044 424 SUPERFAMILY Protein kinase-like (PK-like) 253 322 IPR011009 -
Amo14g3044 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Amo14g3044 424 Pfam Helix-loop-helix DNA-binding domain 322 361 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3044 Amo-Chr14 128832768 128837012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3044 198 332 Receptor kinase-like Gene Family AT4G23190 37.908 1.88e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo14g3044 Cpn60_TCP1 1.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3044 K04077 - aip:107639583 346.665