Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3003 ATGCTTATTGTTAAAGCTAATGATTTTATGCAGGTGCTGCTGTCAATATGTTCATTGCTAACAGGTCCTGCTGTCAATATGGCATATATGATGGATGGTGATGATGAGTATATTCAAGCATCTAAAGGGAAGAATGTTGAAAGTTTCACATGTTCAGAAGTAGCACTACCACAGAACAAAAATGCTAAGAAGAAAAAGAGTAAGATAGAGAACAAGAGAAGGTTCAGTGATGAGCAAATTAGATCACTTGAGTGCATATTTGAGTCAGAGTCCAAGCTTGAGCCAAAGAAGAAGATTCAGCTAGCAAGAGATCTTGGATTGCAGCCAAGGCAAGGTTTTATATGGTTTCAGAACAGATGGGCAAGATCACTTTTCCTTTTAATGGTCCTTTATAGAAAGCATATGGACTTGCCTCCTGAATTTGACAGATCACAAGTTTAG 441 0.3787 MLIVKANDFMQVLLSICSLLTGPAVNMAYMMDGDDEYIQASKGKNVESFTCSEVALPQNKNAKKKKSKIENKRRFSDEQIRSLECIFESESKLEPKKKIQLARDLGLQPRQGFIWFQNRWARSLFLLMVLYRKHMDLPPEFDRSQV* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3003 146 Coils Coil 59 79 - -
Amo14g3003 146 SMART HOX_1 69 130 IPR001356 GO:0003677
Amo14g3003 146 Pfam Homeodomain 72 122 IPR001356 GO:0003677
Amo14g3003 146 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 34 122 - -
Amo14g3003 146 ProSiteProfiles 'Homeobox' domain profile. 66 122 IPR001356 GO:0003677
Amo14g3003 146 Gene3D - 51 124 - -
Amo14g3003 146 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 122 IPR045224 GO:0003700
Amo14g3003 146 CDD homeodomain 72 119 IPR001356 GO:0003677
Amo14g3003 146 SUPERFAMILY Homeodomain-like 61 122 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3003 Amo-Chr14 127373471 127378047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3003 60 122 Homeobox Transcription Factor Family AT2G46680 66.667 2.20e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Amo14g3003 Homeodomain 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3003 K09338 - aip:107619340 199.134