Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2988 TTTGAAGAAGCATCATACGGCATTGCATATGACGTGAGTGAGCATTCTAATTCCATCGACGTTAATATTCCGTCTTTGAGTGAAGATGACACACCACTTGTGGAACAGGTAATTTGGAAAGAATCTGAAGACGTTAATCAAAAAAAGGATGATGCTACCGTAATTAATAATGAGTTGCCGGATCACACTGGAATTCCAATAGAGAAAATCCTGTACGTAAGATTGAGATTTAATTCGTTGCAGCTGGCAAAAGAGTTCTATTCTAATTATGCAAAGAAAGTTGGGTTTGTGACTAGGATTAGGAATACCAACTTTGACAAGACCAGAAAGAAATTAAAGACAGCAACGCGGGTAAAGAGAATAACAATAGACGGATGCAAAGCAAGGATGTACGTGATGCTTGATAGGCAGAAGGATAATTGGATGGTGTCCAAATTAGAATTGAAGCATACCCACACGTGTTCTGCCAAGCAAGCTGTGCATTACAGTAAGTACAGGGAACTGATCATGCATGCCAATTTCCATTGTCATCAGATGATTGACCATTATGACAATTGTCGAATGTGGGTTCCAATATATTTTCAAGGTGAATTTTGGAGTATGCACGCCTTTTTCGGTAGTTACCTGCATTACAAAAGTGGACTGGTTCAGTTCGTTCATGAGTATGACAATCGTGAGTACACAACTTCTAAGTTTAGGGAAGTTCAACATGAATTCAGAAAAAAAGGGGATTGTTTAGTCCATGGTGTCACTCAAGAGGGTGATTTGTTCGGGTCCTGGACGTACATTGTCGAGTTTGACCTAGAGACACACAAGGTTCGGTGCGAATGCAACATGTTTGGATCAAGAGGTATTCTTTGTTGCCACTGTCTTGCTGTGTTCTTTCATTATGGAGTAGACAGAGTATCATCTTGCTATGTTATCCCTTGCTGGAGCAATAATGTACAATGGAAACACACTTTCATCAAGAGTAGCCACGACGAGAAGTCAAAGTTGCTTGATTATCGTGCGAACTGGGGTCAGGTGTCACAACCCCATCTTGGTGAATCTGACAATCAAGGTCCTTCAAAGGTTTCAACGAAGGGTCGCCCAAGATTGAAGAGGATTGGATTTGAACTCGACACCTCAATCAAGAAATCTATGCGAAGAAAGAAGAAGAATCCACCGCCGGAAGTTGATCAAGCAATGAATCCAGATATAGTAGGGGGTTATGCTGGGAGAGCGAATGAATTACAGGAACATGGCGGGTTCTTGTCATTGTTAAATTCATTTCGGCCTACTTAG 1284 0.4112 FEEASYGIAYDVSEHSNSIDVNIPSLSEDDTPLVEQVIWKESEDVNQKKDDATVINNELPDHTGIPIEKILYVRLRFNSLQLAKEFYSNYAKKVGFVTRIRNTNFDKTRKKLKTATRVKRITIDGCKARMYVMLDRQKDNWMVSKLELKHTHTCSAKQAVHYSKYRELIMHANFHCHQMIDHYDNCRMWVPIYFQGEFWSMHAFFGSYLHYKSGLVQFVHEYDNREYTTSKFREVQHEFRKKGDCLVHGVTQEGDLFGSWTYIVEFDLETHKVRCECNMFGSRGILCCHCLAVFFHYGVDRVSSCYVIPCWSNNVQWKHTFIKSSHDEKSKLLDYRANWGQVSQPHLGESDNQGPSKVSTKGRPRLKRIGFELDTSIKKSMRRKKKNPPPEVDQAMNPDIVGGYAGRANELQEHGGFLSLLNSFRPT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2988 427 ProSiteProfiles Zinc finger SWIM-type profile. 262 298 IPR007527 GO:0008270
Amo14g2988 427 PANTHER OS03G0843700 PROTEIN 42 162 - -
Amo14g2988 427 MobiDBLite consensus disorder prediction 343 359 - -
Amo14g2988 427 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 162 IPR031052 GO:0006355
Amo14g2988 427 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 227 329 IPR031052 GO:0006355
Amo14g2988 427 PANTHER OS03G0843700 PROTEIN 227 329 - -
Amo14g2988 427 MobiDBLite consensus disorder prediction 377 398 - -
Amo14g2988 427 Pfam SWIM zinc finger 274 297 IPR007527 GO:0008270
Amo14g2988 427 MobiDBLite consensus disorder prediction 343 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2988 Amo-Chr14 126909066 126912138 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo14g2988 SWIM 0.00031 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2988 - - aip:110263722 318.161