Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2889 ATGTCACGCATCCTCAACAACAACAAAAAGACTGAAACTATTCCTAGAATTTTGGTGTTTGCTGTAGAAATAGGAGATCGCGTAGGAGACGCACTGGAAGTAGAGAGTATTCTTGAGAAATGGAAGGAGTACAATAAGCAGCAACAACAACTCATAAGTGAAGGAGATGAGGTTGAAGTGATTCACAAAGTTCCTGCAAAGGGATCCAGAAAAGGGTGTATGAGAGGTAAAGGTGGACCACAGAATTATGATTATAAATTCAGGGGTGTGAGGCAGAGGATTTGGGGCAAATGGGTTGCAGAAATCCGCAAACCTATCAACAGCAAGCATGTTGGTGAAAAAGCAAACAGGCTTTGGCTTGGAACTTTTTCTACTGCACTTGAAGCTGCTTTTGCTTATGATGAAGCAGCAAGGACCATGTATGGCCCTGGCGCTCGTTTGAACTTTCCTCACCATTATGGCATAAAATCAATAGGTTCTAATGGATCATCTATTAGTACAGGATTTGATCAAAAATCACCAAGTGGAACCTATGTAGATATTTTGAACAGTGATAATGTTGCAAAAGTTGATTGGTTGGAGGGGAATCTCGGTATGGGTCTGGAAGAACAACTTAAGTTTTCTCAGGCAAACGAATTATTGGAGATGGAATGTGAGGGAGGAATTCTTCAAGAGCCTTTTAAGTATAATCCTACGTGCATGGCTATGACGTGCATGGCTATGAATATAGGAGCTGATTATAACTCTTGTGATACTACTGCACAGGGGATGACGGAGAAGAGTGAAGTGGAAAATTACAAATCTAGTAATGAGTTGAACTGCACAAACCATTGCTTTGGATATTTGCATAATATGATTCCAAACAGTAATCCAAAGTATGAGCAGTTCAATAATCTCAAATCTGAGGCAACTATTCCAACCAAAGATATGGAGGGAGTACTTGCAGAAATTCTGCAGTTTTACAGAACATGTTCCGAGATGAATAATGTTCAGTCACAAATTGATCAATTTACATATAAGCAATATATTGTTAGTGATTGCAAGAATGAAGCAGCCAATATAATAGGAGATTCAAAAAATCATTCTATGCAGAGAAGTAATTATCTAGTTACGAGTGGTACTTTTGGATCAATTGCAAATGTGTCAGAAAATGAGGATTTGAATATCAATAATACTAATAAGGACTCTACATTACAAGAGAAAAGAAATCATGAAAATTCAGAGTGCGGATGTAGCTCTGGGCAGAGTAGGAAGTGTTCTGATACTAGGTGTTCTGATACTTCGCAACAGTTGCAAAATTTGGGTGGTTACTTACCTGAACACTTGAATAATATACAGTTTGCAGACATGGAAGTAGGTCATGATTATAGTTTCTTGAGTCCAGACTATGACTTTGGTTTATTGGAAGAGAAGAAATTACTTGATGTGTGCTTTTCACGTAGAAGATCTAGATCGTGA 1458 0.382 MSRILNNNKKTETIPRILVFAVEIGDRVGDALEVESILEKWKEYNKQQQQLISEGDEVEVIHKVPAKGSRKGCMRGKGGPQNYDYKFRGVRQRIWGKWVAEIRKPINSKHVGEKANRLWLGTFSTALEAAFAYDEAARTMYGPGARLNFPHHYGIKSIGSNGSSISTGFDQKSPSGTYVDILNSDNVAKVDWLEGNLGMGLEEQLKFSQANELLEMECEGGILQEPFKYNPTCMAMTCMAMNIGADYNSCDTTAQGMTEKSEVENYKSSNELNCTNHCFGYLHNMIPNSNPKYEQFNNLKSEATIPTKDMEGVLAEILQFYRTCSEMNNVQSQIDQFTYKQYIVSDCKNEAANIIGDSKNHSMQRSNYLVTSGTFGSIANVSENEDLNINNTNKDSTLQEKRNHENSECGCSSGQSRKCSDTRCSDTSQQLQNLGGYLPEHLNNIQFADMEVGHDYSFLSPDYDFGLLEEKKLLDVCFSRRRSRS* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2889 485 Pfam AP2 domain 86 142 IPR001471 GO:0003700|GO:0006355
Amo14g2889 485 Gene3D AP2/ERF domain 85 152 IPR036955 GO:0003700|GO:0006355
Amo14g2889 485 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Amo14g2889 485 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Amo14g2889 485 ProSiteProfiles AP2/ERF domain profile. 86 150 IPR001471 GO:0003700|GO:0006355
Amo14g2889 485 SUPERFAMILY DNA-binding domain 86 151 IPR016177 GO:0003677
Amo14g2889 485 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 394 - -
Amo14g2889 485 CDD AP2 86 152 IPR001471 GO:0003700|GO:0006355
Amo14g2889 485 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 29 394 - -
Amo14g2889 485 SMART rav1_2 86 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2889 Amo-Chr14 123204869 123206624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2889 33 151 AP2-EREBP Transcription Factor Family AT2G40340 55.000 1.92e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo14g2889 AP2 3.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2889 - - aip:107636903 906.746