Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2883 ATGGACAACAAGATCACTAAGGATCTCAGCGAAGAGGATCTCATCACTCTTAGAGATGAAGTCTCCAAATACGTCATTGAAGGCGATTTGGTACGTTTGCTGAAGAAGGCAAACAAAATATCAGTGCTATGCGATGCCGAAGTCGCACTCATCATCTTCTCTACCAAAGGCAAGCTCTTCGAATATTCCAGTGATCCCTGGTTCGTACCTCTTCATTCTCCCTCTCTCTGA 231 0.4459 MDNKITKDLSEEDLITLRDEVSKYVIEGDLVRLLKKANKISVLCDAEVALIIFSTKGKLFEYSSDPWFVPLHSPSL* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2883 76 Gene3D - 1 31 - -
Amo14g2883 76 PANTHER MADS BOX PROTEIN 33 66 - -
Amo14g2883 76 SMART madsneu2 16 65 IPR002100 GO:0003677|GO:0046983
Amo14g2883 76 Gene3D - 32 71 IPR036879 GO:0003677|GO:0046983
Amo14g2883 76 ProSiteProfiles MADS-box domain profile. 33 66 IPR002100 GO:0003677|GO:0046983
Amo14g2883 76 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 33 62 IPR002100 GO:0003677|GO:0046983
Amo14g2883 76 SUPERFAMILY SRF-like 33 66 IPR036879 GO:0003677|GO:0046983
Amo14g2883 76 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Amo14g2883 76 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Amo14g2883 76 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 33 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2883 Amo-Chr14 123117381 123117868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2883 33 65 MADS-box Gene Family AT1G26310 81.818 3.64e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo14g2883 SRF-TF 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2883 K09264 - vri:117904127 65.4698