Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2788 ATGACGAATGGTATTACGCACGAGCCTTCTCCTTCCATGCTCGTTGGCCGGTTTAACGCCTTACTTCCACAGCGCCAAGGCTACCTCAAGGCTTTCTCTACCAAAGAAATTATTCGGACATATGGGCTCTTGTTGTCAGAACTCACCTCCAACGTGAACCCTATCATTACGGATCTCACTATCATTGCCGGCCAGCAGAGGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTAGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGTGGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGAACATGTTATTAAACCACAATCCTTGCAACAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGACTCAATGGAAACTGTAGGTAATACAAGAGAAAGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAAGGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTAACAAAGGCTCTGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCCTGGCAGAAATGGTTTAAGGAGCAAGTTTTTATTGGCATCATGGCAGGACACTGAAGAAGAGGAGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTTAATATGGGGGCTTCTCTCCCTGCTGTCAATGCTCATGCTACTTGTCCTTCTGGCTTGAATCCAGCATTTCCATTGCAAAAACGTCCTAGGAGTTTGTTTGAACCAATAAACGTTAATAATAACACCAATGGCCAAAGTTTACATTCACATGGGGGAACCTTGCCACCTTTACATCCAAGCCTCCCACATGCTCCATCACAAATGATGTCTCATCCCTATACCGATGCTTCGGTGACAAGTCAACCACCACCTGCATATCTTAATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCAATCCACCCACCGGACTGGATTCCATTGGGACAGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTTCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAAGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCGAAAAGCCGGAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGGCTTCGATGAGTTTTACAGCGACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACATTGGCCACCATGGACAGACATCAACTAGGACCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCTACTATGCCCTCAACCAATAGGGAACCTACCAAGGGAGTAGTAAGAGAAAAAGATTGCGGGTCGACCAAACATCAGTTTTGTGCACCCTTAATTAGGACTTACTAA 1698 0.4405 MTNGITHEPSPSMLVGRFNALLPQRQGYLKAFSTKEIIRTYGLLLSELTSNVNPIITDLTIIAGQQRKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCVAYRQVQPNLHSVLQRLFVNNQQSFANHLGAYDFRGPILGEHVIKPQSLQQMEHSSSIMDNVGGDRLDSMETVGNTRERGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQQGQSPRALIEAYGCNKGSEIPSTKLLLVEQPGRNGLRSKFLLASWQDTEEEEKRKLSNDLSNSSQYPFNMGASLPAVNAHATCPSGLNPAFPLQKRPRSLFEPINVNNNTNGQSLHSHGGTLPPLHPSLPHAPSQMMSHPYTDASVTSQPPPAYLNLISSLVNHGVISVTNPPTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLSRQCTSCGLRFKKQDEHSRHMDWHVTRNRMSKSRSRRGLKSGLQGFDEFYSDEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDSDSTMPSTNREPTKGVVREKDCGSTKHQFCAPLIRTY* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2788 565 Pfam CID domain 52 137 IPR006569 -
Amo14g2788 565 CDD CID_Pcf11 38 138 - -
Amo14g2788 565 MobiDBLite consensus disorder prediction 525 539 - -
Amo14g2788 565 SMART 558neu5 36 177 IPR006569 -
Amo14g2788 565 Gene3D - 29 174 IPR008942 -
Amo14g2788 565 ProSiteProfiles CID domain profile. 33 180 IPR006569 -
Amo14g2788 565 ProSitePatterns Zinc finger C2H2 type domain signature. 440 460 IPR013087 -
Amo14g2788 565 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 481 530 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo14g2788 565 MobiDBLite consensus disorder prediction 524 548 - -
Amo14g2788 565 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 481 530 - -
Amo14g2788 565 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 472 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Amo14g2788 565 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 472 - -
Amo14g2788 565 SUPERFAMILY ENTH/VHS domain 34 138 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2788 Amo-Chr14 120093932 120098114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2788 347 530 C2H2 Transcription Factor Family AT4G04885 41.494 1.76e-42 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2788 K14400 - adu:107488587 373.244