Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2749 ATGGAAATGTCTTCGAGCCCTCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTCGTAGAACCGCTGTTGTTCGTGCACTCACTCAAGATGTTGATGAATTTTACGGCCTCTGTGATCCAGACAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAATCATGGGAAGTAACTCTGCCAGCAGAGGAGGTTCCACCGGAGCTTCCTGAGCCAGCACTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTTTGGTTGCGGTTCACAGTGACTCATGGCTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAATGAGAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAGGTTGTGACTGACAGAAAACCAAGCAAGGACAAACCCACTGTGGATAGTGGGAGCAAATCTCGGGGAAGCACCAAGAGGTCAAGTGACGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCACAGCGAAACCCTCTGTGGTAGCTGTGGCGGAAATTACAACGCAGATGAATTCTGGATTGGCTGTGATATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAAGATTACCCCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCGTCATGCAACATGAGGCGGAGCAGGCCCTAG 720 0.4847 MEMSSSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPSKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCNMRRSRP* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2749 239 MobiDBLite consensus disorder prediction 148 165 - -
Amo14g2749 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Amo14g2749 239 SMART PHD_3 185 233 IPR001965 -
Amo14g2749 239 MobiDBLite consensus disorder prediction 134 176 - -
Amo14g2749 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Amo14g2749 239 PANTHER CPG BINDING PROTEIN 3 238 IPR045104 GO:0006355|GO:0042393
Amo14g2749 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Amo14g2749 239 CDD PHD_AL_plant 185 235 IPR044104 -
Amo14g2749 239 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 238 - -
Amo14g2749 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Amo14g2749 239 Pfam PHD-finger 186 233 IPR019787 -
Amo14g2749 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2749 Amo-Chr14 117945490 117949932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2749 4 238 Alfin-like Transcription Factor Family AT5G05610 76.695 2.12e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Amo14g2749 Alfin 6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2749 - - gmx:100793126 459.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2749 14 117945490 117949932 Amo14g2749 14 117945490 117949932 ECH
Amo14g2749 14 117945490 117949932 Amo04g1684 04 80169270 80173785 hybridization
Amo14g2749 14 117945490 117949932 Amo12g2289 12 103300493 103304659 PCT
Amo14g2749 14 117945490 117949932 Amo02g2526 02 79072756 79076949 PCT
Amo12g2289 12 103300493 103304659 Amo14g2749 14 117945490 117949932 PCT
Amo02g2526 02 79072756 79076949 Amo14g2749 14 117945490 117949932 PCT