Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2675 ATGCTTGTATGCGGGATAGGTACTGGTGGTACCATCACTGGTGCAGAAAAATATCTGAAAGAGAAGAATTCCAACATAAAGAGTGCACGTCTGCATCCTCCATCGAAAAATTGGAATCATTTAAACATATTTTGTTGTCCAGCTGTTGCAGCTGAATCTTTAGCTCTGACCCTGCAAGCATTTTGCAATTTAAAAGATTCAAAAGAACCTTTTGAAAGATGTCTAAATGCACAGAAAGTCTTACTTCCTGATGACCATATTCAGGTTTGTTGTTCCATGACAAGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCAGCAATTAAGTTCCACGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCAGCGACAAAGCACTGGGTTTCCAAGAGGAATTTCCAAATATAGAGGCGTTACCTTGCACAAGTGCTTAGGAAGAGCCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATGCATGGGGGAATGATGTTTGTTGTTCGGATTTGGTTAATAAAGGCTGGATAAAAAATCAATGGATACCACATAAACTTTCAGGTCCTCTAGATGGTATTAGCATTTCAACCATTGCTTGTGGAGAATGGCACACTGCCATTGTCTCTAGCTTTCTTGGCCATGGCAATCTTCAGAGCTGTTCTCGACTGAAACATGTTGAGTCTCTTAGCGGTCTAAAGGTGAGGTCTGTTGCTTGTGGTTCATGGCATACAGCTGCAATTATGGAAGTCATGGTTAATCACTTTCGGTATAATACTCCTACGGGCAAGCTGTTTACTTGGGGAGATGCAGATGAAGGGAGGCTTGGTCATGCAGATAATGGAAATAAGCTTGTGCCGACTTGTGTTTCGCAATTCGTTGACTGTAGCACTTACTAA 984 0.4197 MLVCGIGTGGTITGAEKYLKEKNSNIKSARLHPPSKNWNHLNIFCCPAVAAESLALTLQAFCNLKDSKEPFERCLNAQKVLLPDDHIQVCCSMTSGFDTAHAAARAYDRAAIKFHGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLQRQSTGFPRGISKYRGVTLHKCLGRACGEYHTCALTDSGEVYAWGNDVCCSDLVNKGWIKNQWIPHKLSGPLDGISISTIACGEWHTAIVSSFLGHGNLQSCSRLKHVESLSGLKVRSVACGSWHTAAIMEVMVNHFRYNTPTGKLFTWGDADEGRLGHADNGNKLVPTCVSQFVDCSTY* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2675 327 SUPERFAMILY DNA-binding domain 97 125 IPR016177 GO:0003677
Amo14g2675 327 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 186 240 IPR000408 -
Amo14g2675 327 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 291 327 IPR000408 -
Amo14g2675 327 PANTHER F12P19.9 PROTEIN 173 324 - -
Amo14g2675 327 Gene3D - 148 239 IPR009091 -
Amo14g2675 327 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 173 324 - -
Amo14g2675 327 SUPERFAMILY RCC1/BLIP-II 173 323 IPR009091 -
Amo14g2675 327 SMART rav1_2 92 130 IPR001471 GO:0003700|GO:0006355
Amo14g2675 327 Pfam Regulator of chromosome condensation (RCC1) repeat 291 321 IPR000408 -
Amo14g2675 327 Gene3D - 1 36 IPR036052 -
Amo14g2675 327 Pfam Regulator of chromosome condensation (RCC1) repeat 173 196 - -
Amo14g2675 327 Gene3D - 240 326 IPR009091 -
Amo14g2675 327 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 266 276 IPR000408 -
Amo14g2675 327 Gene3D AP2/ERF domain 84 126 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2675 Amo-Chr14 114534556 114536408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2675 96 169 AP2-EREBP Transcription Factor Family AT4G36920 91.892 2.48e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2675 - - adu:107481014 300.441