Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2578 ATGGCATCTCCATTCAACATGCTTAAAGATCTTGACCTTGCTGCTGCTAATCAAGTTTGGCGTATCAAGATTTGTGTTATCAAGATATGGTCTATTATCATAGGTGAAGAGAAGTTTAGGAGGCCCAACTTGGAACTGGTTGTTATGGATGAATTAGTAAGCCATCGAATACAGTGTTCTGTTAGGAATCCTCTGAGGAGATTCTTTGAACAGGATTTAATTGAGGGTAAGGTGTACTCTATTGCTAATTTCTCACTTGAACCTAATAATTTGAAGTACAAGCCAACAACCCATGCTTTTCGTGTTTTCTTCAAGAGGGAAACTCAGTGTCGTTCATTAGGGGATATTAACTTCCCTAACAATATTTTTCACTTTGTCCCAAATGAAATGATACTTAGTCATGATAATCACCACTCTCACTTGATAGATGTCATTGGATTGTTAACCGGAAAGAGTGATATAATAGAGTTCACAAAAAATGGAAAGAAGTCTATATACATGGTGATTGAGCTTGATGATATGAAATCTAAGGGTAAAATAAGGTGTACTTTGTGGGAGGATTTTGCTAATAAACTGGTGAAACACATGGAGGAACAGCCTTCTACTGAATTTATAATCATCCTGCAGTTTGCCAAGTTTAACATGTTCAAGGGAACTATGGGCATATCTAATACAAACTATAACTCTACCCTATACATTAATGCTGACCTTCAAGAGGTTAAGGAATTTAGACAGAGATTTATTATGGGAAATGACAAGGCATCTAACCAGCTTTCTCAAATTGCATCTGATGTTTCAATGTCACTTGAGCAAGATCTTATTAGCCATACCCCATACAAGCCCATTTCTGAACTTAAGGACACCACTGAGGGTAGAATATTTGTTACTATTGGAACAGTCATGTCCATTGATACTAGATTCGGTTGGTGGTATAAGGGGTGTAAGATGTGCTTTCATTCACTCAAAGAGGATGAGAATTCATACTATTGCCAATTCATTTACTGTATTCACCTCAGAGTATCTGATGAAATGGATTCTGCCTCATTTATTATTTATGATAAGGAAGCCTCCAAGTTTCTTGAAATTTCTGCTTCCGAGCTTCGATTGAAACAGATAGCAAAGGGTTACAACAAGGATGAATTTCCCTCTGAGATAAACTCATTTAGAGGTAAGAAGTTCCTATTCAAGGTTTCTGTCAAGTTCGATGATATCAATGCTTTCCAACCTTGTAAGATAACTGTTTTGAAGTTGACTGAAGATCCAACTATCCTGAATTTGTTTGCTGCCAAGTACAAGCTATCTGATCCGAACATCCCCATTGAAAACTCCGAGCTTCAAAGCTTGCATACATATTCTACTGATAATGCTAAGGAGATCAGTTCTCAGTCATGTGAAATTATTTCTCTTGACGTTAATGATGACTTTGTTACTCCCAAGAGAGGTATTATAGCTGGTGTAATGACAAAAAAATTGGTAGATGTTTTTCCAGAGACTGCCACTACTTCCACTTCCAAATGTAGAAAGCTCTCTCATGATTCTGACTGCAGCTCAATCAAAAAGCATGCTGACTAA 1572 0.3709 MASPFNMLKDLDLAAANQVWRIKICVIKIWSIIIGEEKFRRPNLELVVMDELVSHRIQCSVRNPLRRFFEQDLIEGKVYSIANFSLEPNNLKYKPTTHAFRVFFKRETQCRSLGDINFPNNIFHFVPNEMILSHDNHHSHLIDVIGLLTGKSDIIEFTKNGKKSIYMVIELDDMKSKGKIRCTLWEDFANKLVKHMEEQPSTEFIIILQFAKFNMFKGTMGISNTNYNSTLYINADLQEVKEFRQRFIMGNDKASNQLSQIASDVSMSLEQDLISHTPYKPISELKDTTEGRIFVTIGTVMSIDTRFGWWYKGCKMCFHSLKEDENSYYCQFIYCIHLRVSDEMDSASFIIYDKEASKFLEISASELRLKQIAKGYNKDEFPSEINSFRGKKFLFKVSVKFDDINAFQPCKITVLKLTEDPTILNLFAAKYKLSDPNIPIENSELQSLHTYSTDNAKEISSQSCEIISLDVNDDFVTPKRGIIAGVMTKKLVDVFPETATTSTSKCRKLSHDSDCSSIKKHAD* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2578 523 SUPERFAMILY Nucleic acid-binding proteins 277 420 IPR012340 -
Amo14g2578 523 CDD RPA1_DBD_A_like 21 108 - -
Amo14g2578 523 Gene3D - 273 423 IPR012340 -
Amo14g2578 523 PANTHER BNAC07G49340D PROTEIN 50 481 - -
Amo14g2578 523 SUPERFAMILY Nucleic acid-binding proteins 8 115 IPR012340 -
Amo14g2578 523 SUPERFAMILY Nucleic acid-binding proteins 136 247 IPR012340 -
Amo14g2578 523 CDD RPA1_DBD_B_like 143 248 - -
Amo14g2578 523 CDD RPA1_DBD_C 282 436 IPR013955 -
Amo14g2578 523 Pfam Domain of unknown function DUF223 45 133 IPR003871 -
Amo14g2578 523 PANTHER REPLICATION FACTOR A 1, RFA1 50 481 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo14g2578 523 Gene3D - 9 115 IPR012340 -
Amo14g2578 523 Pfam Replication factor-A C terminal domain 297 418 IPR013955 -
Amo14g2578 523 Gene3D - 116 258 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2578 Amo-Chr14 108992563 108995143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2578 56 414 Core DNA Replication Machinery Family AT5G08020 23.037 4.25e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2578 - - aip:107636694 905.59