Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2326 ATGTTGGTGGTGATAGAGCAGCAAGAGACAGAGGATCGAAACGCCAATCCCTCCAACGCGGTTGCGGGTAACGACGCTTCTGACGGTTTTGAAACGGCCAGCGACACCGACCTTGGCAGTGACAACGGAGGCGATGACGTCGGAGCTAGCAGCTATGATCAACGGCAGCAGCAACATCAACAGCAGCAGCTGAAGACAGAGCTTTCCGAGCTGGAGCCGGAGCCGGAGCCTGAGCAGAGTGTTTCTCCAAGTAATAGTTGCCCTGGGGATCTCTTGATCAATGAGGAGTTGGAGAAGAAAGCATTGGTTCAAGCAAATGAAGCAAAGGCAGAAGGGAACAAGCTTTTTGTGGATGGGAAGTATGAGGAAGCATTATCCCAGTATGAACTTGCTCTACAAGTTGCACCTGACATGTCTTCATTGGTTGAAATACGCTCGATATGCCATGCAAACCGTGCTGTGTGCTTTCAGAAACTGGGAAAATATGACAACACAGTTAAAGAATGCACAAAAGCACTAGATCTGAATCCAGTGTACATTAAAGCTTTAGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAACATTTTGAAGAAGCCATTATTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAGGCCATCAGGCGACTTGAGCCGCTTGCTGCAGAAAAGCGGGAAATCATGAAGGAAGAGATGATTGCAAAACTAAAAGAAATGGGAAATTCTGTCCTGGGCCGTTTTGGGATGAGTGTCGATAACTTCAAAGCAGTTAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAGCGTTAA 834 0.4568 MLVVIEQQETEDRNANPSNAVAGNDASDGFETASDTDLGSDNGGDDVGASSYDQRQQQHQQQQLKTELSELEPEPEPEQSVSPSNSCPGDLLINEELEKKALVQANEAKAEGNKLFVDGKYEEALSQYELALQVAPDMSSLVEIRSICHANRAVCFQKLGKYDNTVKECTKALDLNPVYIKALVRRGEAHEKLEHFEEAIIDMKKILEIDPSNDQARKAIRRLEPLAAEKREIMKEEMIAKLKEMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2326 277 Pfam Tetratricopeptide repeat 150 177 IPR019734 GO:0005515
Amo14g2326 277 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Amo14g2326 277 ProSiteProfiles TPR repeat profile. 105 138 IPR019734 GO:0005515
Amo14g2326 277 MobiDBLite consensus disorder prediction 9 39 - -
Amo14g2326 277 MobiDBLite consensus disorder prediction 1 90 - -
Amo14g2326 277 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 21 277 - -
Amo14g2326 277 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 21 277 - -
Amo14g2326 277 Gene3D Tetratricopeptide repeat domain 69 244 IPR011990 GO:0005515
Amo14g2326 277 MobiDBLite consensus disorder prediction 47 68 - -
Amo14g2326 277 Pfam Tetratricopeptide repeat 181 213 IPR013105 -
Amo14g2326 277 SUPERFAMILY TPR-like 105 223 IPR011990 GO:0005515
Amo14g2326 277 SMART tpr_5 105 138 IPR019734 GO:0005515
Amo14g2326 277 SMART tpr_5 180 213 IPR019734 GO:0005515
Amo14g2326 277 SMART tpr_5 146 179 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2326 Amo-Chr14 88798943 88803121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2326 105 247 Calmodulin-binding Proteins AT3G25230 35.762 1.32e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2326 K24926 - gmx:100808386 369.007