Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2255 ATGTCTGAAGGGTATGATATGCTAATGAATGTCAATGCCAAGAAGCTTGAATGGAAATTTCAGATGTATGTTGTTCGTATATGGGAAAATCCAAACAGGTACAACCAAAAGGAAATTAATAGCATAAAGATGGTACTTCAAGATATTAAGGAGTTTAAAATGTACACTATGAGTAACTTCATAGTTGTGAACAAGATGGAGAAGATTAAAACAACAAGAAATCGGTGGACTTTGAACTTTTCCCACAGAACAGTTGTGGTTCGCGTGGAAAATCCAAGTTTTTCTCTCGAACCCTTCTGCTTGAAGCCTATCCCAGAGCTCCTTGCTGCCGAAAAGCTTGATGATTCTCAACTATTGGACATAATCGGGGAGGTTGTTGGGAAGGATGACCCAAGGGATATAATCACAAGCAAAGGAAAGGAAACAAAACATATGGTGGTTGTGATAGCAGACCTAGACAGTAACAACAATCTTGATTGTGTGTTATTTGGTGACATGGTCGATCAAATAGTTCCCCATCTTGAAGATGGCAGGGTTGAACCACTAATAGTGGTGTTGCAGTTCTTTAAACCCAGCCGATGGAATGATAAGGTATCGGTTCAGAGCCACTTTGATGTCTCTAAAATACATGTTAATCCTGACATGAAGGAAGTACATGATTTTCGAAAAAGCTTGCTTGGCAGTGTAACCTCTAATTCGGTCAGGATTAGTCAGGTATCCGGTCATGGTGTGCAATCTGGTGCTGCAGAACTGAAAAGAGGAGGTGTCGTAGTGAAATCAATAGAGGACGCACTCAATTCAACAGAGGAAGGTCCTATATGGATTGGCGGAACCATTGTCTCTATCAATGCTGACAACAACGATTGGTTTTACAAATCGTGTAGGAAGTGTCCAAAGAAAGTAGAAACCCCAATTGGAAATCGATATGAATGTTCCAAGTGTGGTCACACACATGGCAGTGCATCCCTTAGGTACAAGGTTGAAGTTATGGCCTATGATGGAACAGGAAGTATAACTATGCTAATGTGGGATAGAGAAACAACACAGCTTATAGGGAGGCAAGCTGAACAAATCAAGGATGAAGATTGTTTGGAAGGGGAAGGTTACCCCCCAACTCTTGATAACATGATGGATAAAAAGTTACTCTTTAAAATTAATGTCAAAACAGCCAACATCAACAAGCATGACCAGGTTTACACTATCATGAAGATATGTGACGATGAAGACATTGTAGAAAAAAATTGCCCTATGGAATTCATCAGCAATCCTTCTGACGTCTTAACTGAGAATGGGATCAGCAATTCAATGGATGTTTCAGCAACTGTGGCTAATCTCAAGTCTGATAATAATTCTCAGTGCTCTGTGGATGTTGTGGAGGATTCTGTCACAAGCCTCAAGTGCAAGACCCCAATTAGGAGAGCTCTCAATGGGTAA 1434 0.4052 MSEGYDMLMNVNAKKLEWKFQMYVVRIWENPNRYNQKEINSIKMVLQDIKEFKMYTMSNFIVVNKMEKIKTTRNRWTLNFSHRTVVVRVENPSFSLEPFCLKPIPELLAAEKLDDSQLLDIIGEVVGKDDPRDIITSKGKETKHMVVVIADLDSNNNLDCVLFGDMVDQIVPHLEDGRVEPLIVVLQFFKPSRWNDKVSVQSHFDVSKIHVNPDMKEVHDFRKSLLGSVTSNSVRISQVSGHGVQSGAAELKRGGVVVKSIEDALNSTEEGPIWIGGTIVSINADNNDWFYKSCRKCPKKVETPIGNRYECSKCGHTHGSASLRYKVEVMAYDGTGSITMLMWDRETTQLIGRQAEQIKDEDCLEGEGYPPTLDNMMDKKLLFKINVKTANINKHDQVYTIMKICDDEDIVEKNCPMEFISNPSDVLTENGISNSMDVSATVANLKSDNNSQCSVDVVEDSVTSLKCKTPIRRALNG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2255 477 SUPERFAMILY Nucleic acid-binding proteins 103 225 IPR012340 -
Amo14g2255 477 CDD RPA1_DBD_B_like 120 225 - -
Amo14g2255 477 CDD RPA1_DBD_C 258 404 IPR013955 -
Amo14g2255 477 Gene3D - 96 231 IPR012340 -
Amo14g2255 477 PANTHER BNAC07G49340D PROTEIN 84 462 - -
Amo14g2255 477 Gene3D - 236 415 IPR012340 -
Amo14g2255 477 PANTHER REPLICATION FACTOR A 1, RFA1 84 462 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo14g2255 477 SUPERFAMILY Nucleic acid-binding proteins 262 412 IPR012340 -
Amo14g2255 477 Pfam Replication factor-A C terminal domain 277 404 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2255 Amo-Chr14 82081906 82084470 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2255 53 358 Core DNA Replication Machinery Family AT2G06510 24.299 1.50e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2255 - - aip:107635133 758.829