Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g2032 TTTATTTTGATCACTCAGGTTTCGATCCCAGAATTGTACAATGGAATAGGTGATAAGTTTCCTAAATTTTATTATTCTGTAGGTGGTCATACTGCTGGGATGCTTAATCTATTGGCAGTGTTACAGAAAGATAAGTTCAATCCCAGATTCTATGTTGCTGCTGCTACTGATAATATGAGTCTTCAAAAGGCTCAGTTGCTGGAGAACTCCTTGGTAGATCAGCTATCCATTAAAGCGGGAGTAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTACAGAGCAATCCTGGACTCCAGGTGTCCTAATTCAAGCCAAAGATCGTGCTTATAGAATTGGCCAGTATTCTTTCTTTGGAGGCAATATTGGAAGAGATGGCTCGTGCTACTCAACTGTTAGGGGTTGA 411 0.4015 FILITQVSIPELYNGIGDKFPKFYYSVGGHTAGMLNLLAVLQKDKFNPRFYVAAATDNMSLQKAQLLENSLVDQLSIKAGVVGLTLTAASTVIFTEQSWTPGVLIQAKDRAYRIGQYSFFGGNIGRDGSCYSTVRG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g2032 136 CDD SF2_C_SNF 75 116 - -
Amo14g2032 136 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 67 117 IPR030101 GO:0006281|GO:0031297|GO:0036310
Amo14g2032 136 Pfam Oligosaccharide biosynthesis protein Alg14 like 28 76 IPR013969 GO:0006488
Amo14g2032 136 SMART helicmild6 35 115 IPR001650 -
Amo14g2032 136 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 67 117 - -
Amo14g2032 136 Gene3D - 67 118 IPR027417 -
Amo14g2032 136 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 118 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g2032 Amo-Chr14 54495149 54497322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g2032 75 117 RAD5 or RAD16-like Gene Family AT1G05120 53.488 2.64e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g2032 K07441 - gmx:100811229 83.1889