Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1984 ATGGAGAGTGGTGAGAGAGAATGTTACTACAGAATTCTTGGTGTGAGTTCTGATTCTTCGTTTCAAGAGATAAAGCGTGCTTACAGGAAGCTTGCTATGAAATGGCATCCAGATAGGTGGACAAGAAATCCTTCTTTGCTAGGGGAAGCCAAGCGCAAGTTCCAACAAATTCAAGAAGCTTATTCAGTATTGTCTGATCAAAAGAAAAGAACGATGTACGATGCTGGGTTGTATGATCCTGAGGAGGAAGAGGATGAGGGATTTTCTGAATTTGTGGAAGAAATGGTGTCCCTTATGGCCCAAGTGAGACAAGAGGAGAAGGAGTTTGGGCTTGAAGATTTGCAGTCCATGTTCATGGAAATGCTTGAAGGATTCGAGTCTCCTTCTACCATGTATTGCTCCATGCCTTCTTCGTCGATGTTCGAGTTTGATGAATCCCCGTGCGCGAAAAAGGAAGCCAAAAGGATGCGTTTGGATACAAGCATGATGGATAAAACAGGGTCACATTTTCAAGCACCAACTAGCCTTAACTTTGTATGA 540 0.4315 MESGERECYYRILGVSSDSSFQEIKRAYRKLAMKWHPDRWTRNPSLLGEAKRKFQQIQEAYSVLSDQKKRTMYDAGLYDPEEEEDEGFSEFVEEMVSLMAQVRQEEKEFGLEDLQSMFMEMLEGFESPSTMYCSMPSSSMFEFDESPCAKKEAKRMRLDTSMMDKTGSHFQAPTSLNFV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1984 179 SMART dnaj_3 7 69 IPR001623 -
Amo14g1984 179 Gene3D DnaJ domain 5 131 IPR036869 -
Amo14g1984 179 PRINTS DnaJ domain signature 10 28 IPR001623 -
Amo14g1984 179 PRINTS DnaJ domain signature 28 43 IPR001623 -
Amo14g1984 179 PRINTS DnaJ domain signature 49 69 IPR001623 -
Amo14g1984 179 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Amo14g1984 179 SUPERFAMILY Chaperone J-domain 6 80 IPR036869 -
Amo14g1984 179 Pfam DnaJ domain 9 74 IPR001623 -
Amo14g1984 179 PANTHER PUTATIVE, EXPRESSED-RELATED 4 163 - -
Amo14g1984 179 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 163 - -
Amo14g1984 179 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Amo14g1984 179 CDD DnaJ 8 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1984 Amo-Chr14 49786614 49789093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1984 5 75 C2H2 Transcription Factor Family AT1G74250 44.444 3.28e-14 67.8