Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1967 ATGGATGATGAAGTTATTCAGCGAGTGTTCCACGAAGGAGGACGCGATTTCTACCAGCAGCAACCTTCAACTTCCTCCATCCTKCAATCTCTCCCWCTCCATGTGTCTTTTGATCATGGCTATTATTTACTGGTAAAATCTATCCAAGAACTACGTGAGAAAAAGGAAGGCCTTGTTACAGTTGGAATTGGTGGTCCTAGTGGCTCTGGAAAAACAAGCTTAGCAGAAAAGGTGGCATCCGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGTGATGGAGTTGATGAAGGGGGTGATCTGGATTTTATAGATTTCACGAGCTTGATCAAGAATCTTGAGGATTTGATAAAAGGTGATGATACATTAGTCCCAGTGTTTGATTATCAGCAAAAGAGACGTGTTGGCTATAAAGCTATAAAGAGTACTGCATCTGGKGTGATAATAGTTGATGGAACATATGCATTACATGCAAAACTGCGTTCTTTACTGGATATTCGAGTTGCTGTGGTTGGCGGTGTTCATTTTAGTCTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATAGCCTTATAGACAGCATTTTTCCATTATTTAGGAAGCATATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAACAACAGTTTTGTATCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTCCAGAGGGATATTCAAGTACTGCCTTTCAAGGGAATGAATCCCAAACAGATAATTGTATTGAAATGTACCTTAGACCACCTTCCACTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAAAATTTTATTATCAGGCCTAAAGCAGAGTTTGAGGTTGGACGAATGACATTGGGTGGATTGTTGGCTCTTGGATACACAGTTGTCGTTAGTTATAAACGCTCATCCACAACTGTTGATAATGGCAAGGTTTTGGTGTCTTTTGAAACCATTGATGCCCTTGATGAGACATTCATGGTGATGAGAGGAACTAATAGGAAGACTGTTGGAACAGAAGCAATGAGGCTTGGTATCAATGGACCTTGGATTACTAAATCATATCTTGAGATGATCCTGGATAAAAAAGGTGTTCCTCGCCTTAATACACCACCACTGGTGACTAATACATCTGTGCCTGGAAGTCAAGACACTGCAATCATTGCACCAAAACCAATTCGCGTGACTCCTGACCTTGTTACGGGATTGGAGGATTTGTCTCAGCCATGGACTCGGTCCCCAACAAAATCTAAAATGGAACCTGTTATGGCAACATGGCATTTCATATCTTCAGATTCTTCCCACCCTGACAACTCAGTCCTAGATCCTTCATCTTTCAGGGATACCATTAGGCTTGCTCCAATGCCTGAGTCATRTGACCTGGATAGGGGATTGCTTTTGGCTGTTCAAGCCATACAAGCTTTGTTGGAAAATAAAGGTTTCCCAGTCATAGTTGGAATTGGAGGTCCAAGTGGTTCTGGAAAGACTAGTTTGGCTCATAAAATGGCGAATATTATTGGATGTGAAGTGTTATCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTCAAATATGATGACTTCAGCTCTCTTGACTTATCTTTGCTATCAAAGAATATTAGTGACATAAGAAAAGGCCGAAGAACAAAAGTACCAATATTTGACTTGGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTTGAAGTTTCAGAAGATTGTGGAGTGATAATTTTTGAAGGTGTCTATGCTTTGCATCCTGATATCCGAGTATCACTTGATTTTTGGATTGCTGTTGTAGGAGGAGTTCATTCACATTTGCTTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGTTGTTTTATTTCCCAGAATGAGATCATGATGACGGTGTTTCCAATGTTCCAGCAGTACATTGAACCTCATCTCGTTCATGCACACGTTAGTTGA 2040 0.4025 MDDEVIQRVFHEGGRDFYQQQPSTSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGGDLDFIDFTSLIKNLEDLIKGDDTLVPVFDYQQKRRVGYKAIKSTASGVIIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESPEGYSSTAFQGNESQTDNCIEMYLRPPSTSEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRSSTTVDNGKVLVSFETIDALDETFMVMRGTNRKTVGTEAMRLGINGPWITKSYLEMILDKKGVPRLNTPPLVTNTSVPGSQDTAIIAPKPIRVTPDLVTGLEDLSQPWTRSPTKSKMEPVMATWHFISSDSSHPDNSVLDPSSFRDTIRLAPMPESXDLDRGLLLAVQAIQALLENKGFPVIVGIGGPSGSGKTSLAHKMANIIGCEVLSLESYYKQVKDFKYDDFSSLDLSLLSKNISDIRKGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRVSLDFWIAVVGGVHSHLLSRVQRDKSRVGCFISQNEIMMTVFPMFQQYIEPHLVHAHVS* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1967 679 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 483 599 - -
Amo14g1967 679 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 600 678 - -
Amo14g1967 679 PRINTS Uridine kinase signature 513 530 - -
Amo14g1967 679 PRINTS Uridine kinase signature 540 551 - -
Amo14g1967 679 PRINTS Uridine kinase signature 634 644 - -
Amo14g1967 679 SMART AAA_5 512 656 IPR003593 -
Amo14g1967 679 SMART AAA_5 57 207 IPR003593 -
Amo14g1967 679 CDD UMPK_like 515 677 - -
Amo14g1967 679 PANTHER URIDINE KINASE 2 419 - -
Amo14g1967 679 PANTHER URIDINE KINASE 600 678 - -
Amo14g1967 679 PANTHER URIDINE KINASE 483 599 - -
Amo14g1967 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 171 IPR027417 -
Amo14g1967 679 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 419 - -
Amo14g1967 679 Pfam Phosphoribulokinase / Uridine kinase family 105 220 IPR006083 GO:0005524|GO:0016301
Amo14g1967 679 Pfam Phosphoribulokinase / Uridine kinase family 515 678 IPR006083 GO:0005524|GO:0016301
Amo14g1967 679 CDD UMPK_like 60 222 - -
Amo14g1967 679 Gene3D - 512 679 IPR027417 -
Amo14g1967 679 Gene3D - 59 238 IPR027417 -
Amo14g1967 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 678 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1967 Amo-Chr14 49321279 49332103 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1967 508 671 PRT Gene Family AT1G55810 25.843 1.36e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1967 - - gmx:100778905 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1967 14 49321279 49332103 Amo15g1178 15 93040193 93049505 hybridization
Amo14g1967 14 49321279 49332103 Amo01g4054 01 114832852 114837749 PCT