Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1933 ATGGGGCACGTGAGAACTAAGACGGTGAAGAAATCTTCATGCCAAGTCATCGAGAGGTACTACTCTTGCATCACCCTTGAATTCCACACCACCAAGAAGGTTGATAAGGAAACTATCGACATGCTTCAATCTCTAGGTATGTCTGACATCCCTGGAATCACTCAGGTCAATCCTGCTCCTGTTCAGCAGATTCTGTTTGGCCACCCTGGCGCTGGATTCAGCGGTGCTCAGCAGAGGTACTGA 243 0.4897 MGHVRTKTVKKSSCQVIERYYSCITLEFHTTKKVDKETIDMLQSLGMSDIPGITQVNPAPVQQILFGHPGAGFSGAQQRY* 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1933 80 SUPERFAMILY Rps17e-like 1 42 IPR036401 GO:0003735|GO:0005840|GO:0006412
Amo14g1933 80 PANTHER 40S RIBOSOMAL PROTEIN S17 33 75 - -
Amo14g1933 80 PANTHER 40S RIBOSOMAL PROTEIN S17 1 34 IPR001210 GO:0003735|GO:0005840|GO:0006412
Amo14g1933 80 Pfam Ribosomal S17 1 36 IPR001210 GO:0003735|GO:0005840|GO:0006412
Amo14g1933 80 Gene3D - 1 48 IPR036401 GO:0003735|GO:0005840|GO:0006412
Amo14g1933 80 PANTHER 40S RIBOSOMAL PROTEIN S17 33 75 IPR001210 GO:0003735|GO:0005840|GO:0006412
Amo14g1933 80 PANTHER 40S RIBOSOMAL PROTEIN S17 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1933 Amo-Chr14 47106275 47117475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1933 33 73 Cytoplasmic Ribosomal Protein Gene Family AT3G10610 53.333 3.64e-08 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1933 K02962 - ini:109150094 58.5362