Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1898 ATGGGAAGCAAGGTCACAGTGACGGACCACCAATTGTCCACCGTCCGATCCATCGTTGGCTCCGAATTCACCGACATGGACATCATCAGAGCGCTCCATATGGCCAAAAATGACGTCACAGCCGCCATCAACATCATCTTCGACACTCACATTCCCTCCATCGTCAAACCTAAAACCACACCACCACCTACAAACAATCCCAAACCTTCTCCTCTCAATTCATCTCCTCATATGGATACTGCCACTCGCACTGTTGCTTCCCGCTCCAAGAACAATGGCGCTGCTGCTCGTGGAGGAGACGGCAGTAGCTGCTCCAAAGCGTCCGATGATTGGTGGTTTGCTGGTTCCGGCGAGATGTCAGGGCTGTCCACTTGTAAAGGGAGGACTATAAATTCTGGTGACGCAGTGGTTTTCAAGTTTCCTGCCAAGGCTGCCTCGGCTGGGCCTTCGCCGGGGAAGGTCTTCGGGAGGGGGCGGCTGGCAGCGGGGACTTGTTCGGAGATTGTTCGGTTCTCCACAGATCAAGCTGGGGAGATTGGTAGAATACCAAATGAATGGGCTCGGTGTCTGTTGCCTCTTGTGAGGGATGGTAAGGTTAGGATTGAGGGACGCTGTAAATTTGCACCTAATGTTTTGGGCATCATGGATACCATTATTTTGTCAGTCAGTGTATTTATCAATAGGTCAATGTTTGTTAAGCACCAGCAGATATCTCTCAAGGATGCCACTGGCAACTCTACAAATGAATCAGTTTTCCATCCTCTTCCTATCTTATTTCGGTTGCTAGGCCTGGAACCTTTTAAGAAGGCAGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTATCGACCAGAAGGTCCCTTTACAATTGATGAAGTCTGAGCATCCTTCTCAAAATTGCGACGAAAATAAAGAGGATTCCATTTCTGAAACTGATCTTGATAATATTGTTGGTGTTGGGATCAAGCTCGGAGAAATGGATCCCCCAGGCAGTCTTCAGTGTGAGCTACGGCCCTATCAAAAGCAAGCTCTTTATTGGATGATCCAGATGGAGAAGGGGCGAACTGTAGACGGGACAGCAACAACCCTTCATCCATGTTGGGAAGCATATCACTTGGCTGACAAGAGGGAGCTTACTATTTATTTGAATGCATTTTCTGGTGAAGCCACAACTGAATTTCCTAGCACCCTTCAAATGGCAAAAGGAGGGATTTTGGCAGATTCTATGGGTCTTGGAAAGACCATCATGGCCATATCACTTCTTCTTGCCCATTCAGGAAGAGGTGGATCATTAGACAGTCAATCCTTAGCTCAGACTGAGCTGTATACTGAAGATGGTGAAGTTAGTGATACGGTACACAATTTTTCAAACATTCCGACGAAGGCAACCAAATTTGCTGGTTTTGACAAACTGATGAAGGACAAGGATGCTCTAGCAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAAATTGAAACTCATGTACAACCTGGGTCTCTGTCCCTATATGTTCATTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTTCTCAGTCTGATGTTGTTATTACTACATATGGAGTTTTAGCCTCTGAATTTTCCAGTGAGAACGCCGAGGATAATGGTGGACTTTTTTCAGTTAGGTGGTTCAGAGTGGTTCTTGACGAAGCACATACTATAAAATCTTCTAAAAGTCAAATTTCTATTGCTGCCGCTGCTTTAATTGCTGATAACCGTTGGTGTCTTACTGGCACTCCTCTCCAGAACAACCTTGAAGATATTTACAGTCTTCTTCGATTTCTGCGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAGCCATTTGAAGGAGGTGATGCGAGAGGGTTAAAGTTAGTTCAGTCCATTTTGAAGTCAATCATGTTGAGGAGAACCAAGTATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTCCCTCCGGCTGATGTGCAGGTAATTTACTGTGAACAAACAGAAGCTGAGAAGGACTTTTATGAGGCCTTATTCAAAAGATCTAAGGTCAGGTTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTGCTTTTACGGCTTCGGCAATGTTGCGATCATCCTTATCTTGTAATGAGCCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAACTAGCTAAACGCTTCCTTCGAGGAACCCATAATAATTTAGAACGTGAAGTAAAAGATGCACCGTCACTGGCTTATGTTCAAGAAGTAGTTGAAGAGCTACGTAAAGGGGAGCAGGGTGAGTGTCCAATATGTCTTGAAGCCTTCGAAGATGCAGTGTTGACTCCTTGTGCTCACCGCCTATGCCGGGAATGCCTCTTGGCAAGTTGGCGCAATTCCACTTCTGGTTTATGTCCTGTTTGTAGAAAAACAGTTAGCCGGCAGGATCTTATTACTGCTCCTACTGATAGTCGGTTTCAGATTGATATTGAGAAGAACTGGATAGAGTCATGCAAGGTAACTGTTCTTTTGCATGAACTGGAAAGTCTTCGCGCATCAGGCTCCAAGAGCATTGTTTTTAGCCAATGGACTGCTTTTCTAGACCTTTTGCAGATTCCCTTTACACGGAATAACATTTCATTTGTTCGTCTTGATGGAACTTTAAATCAGCAGCAGCGGGAGAAAGTGATCAAACAATTCTCAGAAGATGATGAAATACTGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCTGCTTCAAATGATTTTGTCATGGACCCATGGTGGAATCCGGCTGTAGAAGAACAAGCAGTCATGCGCATCCATCGTATTGGACAAACACAGAAGGTCGCCATTAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGTGGTGCAAGCGCGTAAACAACGAATGATTTCTGGTGCCCTGACTGATCAAGAGGTTCGAACTGCACGGATAGAGGAGCTGAAGATGCTTTTCACTTAG 3069 0.451 MGSKVTVTDHQLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTHIPSIVKPKTTPPPTNNPKPSPLNSSPHMDTATRTVASRSKNNGAAARGGDGSSCSKASDDWWFAGSGEMSGLSTCKGRTINSGDAVVFKFPAKAASAGPSPGKVFGRGRLAAGTCSEIVRFSTDQAGEIGRIPNEWARCLLPLVRDGKVRIEGRCKFAPNVLGIMDTIILSVSVFINRSMFVKHQQISLKDATGNSTNESVFHPLPILFRLLGLEPFKKAELTPGDFYSNKRPIDQKVPLQLMKSEHPSQNCDENKEDSISETDLDNIVGVGIKLGEMDPPGSLQCELRPYQKQALYWMIQMEKGRTVDGTATTLHPCWEAYHLADKRELTIYLNAFSGEATTEFPSTLQMAKGGILADSMGLGKTIMAISLLLAHSGRGGSLDSQSLAQTELYTEDGEVSDTVHNFSNIPTKATKFAGFDKLMKDKDALASGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAKSLSQSDVVITTYGVLASEFSSENAEDNGGLFSVRWFRVVLDEAHTIKSSKSQISIAAAALIADNRWCLTGTPLQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDARGLKLVQSILKSIMLRRTKYSTDREGKPILVLPPADVQVIYCEQTEAEKDFYEALFKRSKVRFDQFVEQGRVLHNYASILELLLRLRQCCDHPYLVMSRGDTQEFADLNKLAKRFLRGTHNNLEREVKDAPSLAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTVSRQDLITAPTDSRFQIDIEKNWIESCKVTVLLHELESLRASGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVIKQFSEDDEILVLLMSLKAGGVGINLTAASNDFVMDPWWNPAVEEQAVMRIHRIGQTQKVAIKRFIVKGTVEERMEVVQARKQRMISGALTDQEVRTARIEELKMLFT* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1898 1022 SMART ultradead3 334 632 IPR014001 -
Amo14g1898 1022 MobiDBLite consensus disorder prediction 71 91 - -
Amo14g1898 1022 Gene3D - 669 785 IPR027417 -
Amo14g1898 1022 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 857 1017 IPR001650 -
Amo14g1898 1022 Pfam Zinc finger, C3HC4 type (RING finger) 784 831 - -
Amo14g1898 1022 MobiDBLite consensus disorder prediction 56 70 - -
Amo14g1898 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 653 IPR027417 -
Amo14g1898 1022 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 1011 IPR027417 -
Amo14g1898 1022 SUPERFAMILY RING/U-box 776 833 - -
Amo14g1898 1022 Pfam HIRAN domain 115 222 IPR014905 GO:0003676|GO:0008270|GO:0016818
Amo14g1898 1022 Gene3D - 395 665 IPR038718 -
Amo14g1898 1022 Pfam SNF2-related domain 341 732 IPR000330 GO:0005524|GO:0140658
Amo14g1898 1022 PANTHER DNA REPAIR PROTEIN RAD5 104 1022 - -
Amo14g1898 1022 CDD RING-HC 787 826 - -
Amo14g1898 1022 SMART helicmild6 886 969 IPR001650 -
Amo14g1898 1022 MobiDBLite consensus disorder prediction 53 104 - -
Amo14g1898 1022 SMART ring_2 787 826 IPR001841 -
Amo14g1898 1022 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 836 IPR013083 -
Amo14g1898 1022 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 396 615 IPR014001 -
Amo14g1898 1022 ProSiteProfiles Zinc finger RING-type profile. 787 827 IPR001841 -
Amo14g1898 1022 CDD SF2_C_SNF 853 980 - -
Amo14g1898 1022 SMART HIRAN_2 114 226 IPR014905 GO:0003676|GO:0008270|GO:0016818
Amo14g1898 1022 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 1022 - -
Amo14g1898 1022 CDD DEXDc_SHPRH-like 338 653 - -
Amo14g1898 1022 Gene3D - 837 1020 IPR027417 -
Amo14g1898 1022 ProSitePatterns Zinc finger RING-type signature. 802 811 IPR017907 -
Amo14g1898 1022 Pfam Helicase conserved C-terminal domain 859 969 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1898 Amo-Chr14 44501089 44508460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1898 1 1022 RAD5 or RAD16-like Gene Family AT5G22750 71.470 0.0 1485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo14g1898 SNF2_N 4.6e-83 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1898 K15505 - gmx:100794452 1623.6