Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1889 ATGCAAAATCGGCGGTCACATCAACAAGACTTTCACATTACCACATCTACTATTCTTGCGTCGACCTTGCACATCACAAGATTGAACACAAAAAACCAAGGAGTAACTATCACAGATTCAAATTCAGGGGCAGGGTTCAGGCCGGGGTTTGATCCATCGGTGCCTCAGAACAGTGCAGGAGTTACTGAGCCTCCAGGACGACCAGAAAACAATCAAGATAGCGTAGCCAACCCCGTGCAAATTCCTGGGCAAGCTGACATTCGACAAGCAGAAGGCGGTCCGAACCCCGGCCTGTACTGTAGCATCTTCCATGATAAGTATGTCATTTACCTGGGATTGTATAGGAACTCGTTTGTTTATTGTTTTAAACTATTTGTGGATTACATCGTCACTGGTGGTGGTTTTCTTAAACCCTGTGTCTGTTGGTTTTCAGGTGCAAGCCTTCTTTGCTGCAGTGAAGGCATTGTCACGGAAAGAAGTGCATTATGGTTTTTATGCAACATCATAGCAGTTAAGGGGTTTATCTGCTGGCAGGTGATTGCGGCTGGTGATCTTTGTGCTATTTGTCAAGAGAAGATGCATGCTCCAATATTACTTCGTTGTAAACACATCTTCTGTGAAGATTGTGTATCAGAGTGGTTTGAGAAGGAAAGGACTTGCCCATTGTGCAGGGCTTTGGTAAAACCAGCAGACTTGAGGTCATTTGGTGATGGTTCTACTAGTTTATTCTTCCAGTTATTCTAA 744 0.4422 MQNRRSHQQDFHITTSTILASTLHITRLNTKNQGVTITDSNSGAGFRPGFDPSVPQNSAGVTEPPGRPENNQDSVANPVQIPGQADIRQAEGGPNPGLYCSIFHDKYVIYLGLYRNSFVYCFKLFVDYIVTGGGFLKPCVCWFSGASLLCCSEGIVTERSALWFLCNIIAVKGFICWQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFEKERTCPLCRALVKPADLRSFGDGSTSLFFQLF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1889 247 Pfam Zinc finger, C3HC4 type (RING finger) 184 227 - -
Amo14g1889 247 MobiDBLite consensus disorder prediction 55 78 - -
Amo14g1889 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 239 IPR013083 -
Amo14g1889 247 ProSitePatterns Zinc finger RING-type signature. 201 210 IPR017907 -
Amo14g1889 247 MobiDBLite consensus disorder prediction 34 78 - -
Amo14g1889 247 CDD RING-HC_RNFT1_like 185 224 - -
Amo14g1889 247 ProSiteProfiles Zinc finger RING-type profile. 186 224 IPR001841 -
Amo14g1889 247 SUPERFAMILY RING/U-box 176 229 - -
Amo14g1889 247 SMART ring_2 186 223 IPR001841 -
Amo14g1889 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 178 247 - -
Amo14g1889 247 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 178 247 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1889 Amo-Chr14 44432889 44434321 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1889 178 247 C3H Transcription Factor Family AT5G01960 91.429 1.80e-41 145