Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1871 ATGGAAGGCAGCAGCAGCAATGGTGGTAGCGGGAAACGCGAGGAAATTGTGGACGTTGGATCGGTTGTTGAAGCTGTTACTGCAGAGGAAGGTGATGCTCCCCTCTACAACGTTGAGAGCCTCTGCATGCGTTGCGGTGAAAATGGGATTACAAGATTCTTACTCACCTTAATTCCTCACTTCAGAAAGATTTTGTTGTCAGCTTTTGAGTGTCCTCATTGTGGTGAGAGGAACAATGAAGTACAGTTTGCTGGTGAAATTCAACCGCGTGGTTGCTGTTACACTCTGCAGATCCCATCTGACAATCCAAAGATGCTTGACAGACAAGTGGTAAAATCAGAATCTGCTACCATTAAGATTCCAGAGTTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTTTCAACGGTGGAAGGCATACTAATGCGAGCTGCTGATGAGCTTCAGGCCCTTCAAGAGGAGCGCAGGAAAGTGTCTCCAGAGACAGCTGAAGCCATTGATCAGTTCTTGGTGAAATTGCGAGCCTGTGCTACTGGAGAGTCAGCCTTCACATTTATTCTTGATGATCCTGCTGGAAACAGCTTTGTTGAAAATCCGTTTGCACCATCATCTGATCCATCATTGACCATCAAGTTTTATGACCGAACCCCTGAGCAACAAGCATTGTTGGGATATCTTGTTGATTCTACACAGATTGAAGGAACTCGCAATGAAGCACAAGCAGGGGGAAATGCTGTGGTTACTGATCAAGTGAGGGGAGAGCCACATGGATCTGTAGGGGCAACTGCTGGTCATCGAGCCATTGCACAGAGTAGTAGTTCAGAAATTGCGGAAGCCTTATTTCGATACACTGCACCGGAAGAGGTGATGACTTTCCCTTCAACTTGTGGTGCTTGTGCCACTAAGTGTGAGACTAGAATGTTTGTCACCAATATTCCATACTTTCAAGAAGTAATCGTAATGGCATCCACATGTGACTCTTGTGGCTACCGCAACTCCGAGTTAAAACCAGGTGGACGAATTTCTGAAAAAGGCAAAAGAATTTCACTTCATGTGAAAAATGTTAACGACTTAAATCGTGATGTAATCAAGTCTGATACTGCAAGTGTAAAAATTCCTGAACTTGAATTGGAATTGGCAAGTGGCACCCTTGGGGGTTTGGTTTCAACTGTTGAAGGTTTGATTACAAAAATTAACGAAAGCCTTCAGAGGGTCCATGGATTTACTTTCGGTGATAGTTTGGATGAAAATAGAAAAAGCAAGTGGCTAGATTTTAAAGAAAAGCTAGACAAGCTTCTTAGCTTGGAAAAACCTTGGACTTTAATTCTTGATGATGCATTAGCCAATTCCTTTATAGCACCTGCAACTGATGATTTAAAAGACGACAATCAATTAACGTTTGAGGAGTATGAGAGGTCATGGGAGCAAAATGAAGAATTAGGCTTGAATGATATGGATACTTCTGCTGCCGATGTTGCTTACGAATCAGCAAATAATACTAAAGTTGAATGA 1518 0.4308 MEGSSSNGGSGKREEIVDVGSVVEAVTAEEGDAPLYNVESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYTLQIPSDNPKMLDRQVVKSESATIKIPELDFEIPPEAQRGSLSTVEGILMRAADELQALQEERRKVSPETAEAIDQFLVKLRACATGESAFTFILDDPAGNSFVENPFAPSSDPSLTIKFYDRTPEQQALLGYLVDSTQIEGTRNEAQAGGNAVVTDQVRGEPHGSVGATAGHRAIAQSSSSEIAEALFRYTAPEEVMTFPSTCGACATKCETRMFVTNIPYFQEVIVMASTCDSCGYRNSELKPGGRISEKGKRISLHVKNVNDLNRDVIKSDTASVKIPELELELASGTLGGLVSTVEGLITKINESLQRVHGFTFGDSLDENRKSKWLDFKEKLDKLLSLEKPWTLILDDALANSFIAPATDDLKDDNQLTFEEYERSWEQNEELGLNDMDTSAADVAYESANNTKVE* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1871 505 SMART zpr1 40 200 IPR004457 GO:0008270
Amo14g1871 505 SMART zpr1 296 456 IPR004457 GO:0008270
Amo14g1871 505 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 15 498 - -
Amo14g1871 505 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 297 488 IPR004457 GO:0008270
Amo14g1871 505 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 42 222 IPR004457 GO:0008270
Amo14g1871 505 Coils Coil 136 156 - -
Amo14g1871 505 Gene3D ZPR1, A/B domain 86 227 IPR042451 -
Amo14g1871 505 Gene3D ZPR1, A/B domain 342 484 IPR042451 -
Amo14g1871 505 PANTHER ZINC FINGER PROTEIN ZPR1 15 498 IPR040141 -
Amo14g1871 505 Pfam ZPR1 zinc-finger domain 40 199 IPR004457 GO:0008270
Amo14g1871 505 Pfam ZPR1 zinc-finger domain 296 454 IPR004457 GO:0008270
Amo14g1871 505 Gene3D ZPR1, zinc finger domain 286 341 IPR042452 -
Amo14g1871 505 Gene3D ZPR1, zinc finger domain 32 85 IPR042452 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1871 Amo-Chr14 43092510 43100153 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1871 12 504 C2H2 Transcription Factor Family AT5G22480 74.494 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1871 K06874 - gmx:100798741 845.499