Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1825 ATGAGATTTCCTTTGTGGTTGCATGGTCACACCGTCATCACATTCCATGTCACTTCTGTTTTCCCGAAGAAAGCGGTGGTACAACTCATGCCAGGAACTGAAGTTGCCGTTGCTCCCAAAAGGCGCAATAGATTGTTGGATTCAGCAGGAGATTCACATCTAGAATCCTGTGATAAGGAACAAACTGCAAAGATGCTTCTCCGTATACAAGATCCAGGGGTATTATGTCATACCAGAACTGATGTCAAAGGTGTTGAGCTCCATATGGGGCTCACTTCTGTCGCTTTTGTTCACCCAGAAACAGCCAAGCACTTCTCTTTTAACATGCTTCAGCCAGTTTCCTTAGTACCAAGAATATCCAAGGAGAATGCCAATATTTCGAAAACCAATGTTTTGAAATCCAAAGGCGGGTCAACTGGCAATGAAGTTGAGAATGGAAATTTAACTGACAAGAAACAACATCGACAAGCTGTTGTTCATCTCTTATTTTCAGAATCTGTGGCTGCAGGGCATGTGATGTTAGCCAAGTCTCTTCGCCTCTATTTGAGAGCTGGCCTACATACATGGGTTTATTTGAAAGCATATGATATCATTAGGGAGAAAAGTATTCCATCCATCACTTTTTCTCCTTGTCAATTCAAACTATTAAAGCAGGATAGTTCTGCTGAGAAAGATGGTCTGGATAGCCACAATAATCACATGAATGGAAAATTACTTGCGAAATCTATGTCAGGTGACTTTGTGGACCCTATAGATTGGTCAATTAACAATGAAGTTGTTGCAGCTCTTTCTGATGAATCCAACTGCAAAGCAGAGGAAGAGAATGCAAATCAGTCTCAGAATCAAAAGAGGATAAAGAGTCTTGTTCGGCTGTGGTATATTGCACAAATTGAGGCAATTACTTCTATTACGGGTGTAGAGGTTAATTCATTGGTCATGTGTAGCCAAACTTTGCTTGATTTCAAATTAAACTGTCACAACCTTGGGGATAATGGGAGAGCTCCCCTACCTTATAATTCTTCAGAGAATAGTGGCAAGACTGCTGAAGTGTTATTTATTTTGACTTTTGGTGATGAACATCTGCATCATGGGAAACCTAATGCATACAAAGTTGCTCTCGGTAAAAGCCTTAAAAGTATCAATATAGGCGATCTGCAGCTTTTTGAAGGGATGAAATTGGGTGATCCCGTGTCTATTCATTCTATCGAAGAGACAGCATCTCAAGAGCACATTAGTTCAAATGTATCTTTACTTAGCTGGATGGAGAAACCAGCTTCTGATATTATTAATCGGATGTTGGTATTGTTATCTTTGAAGTGTGGTCTGTGGTTTGGTTCATGCAACTTGCCACTCCCTGGACATGTTTTAGTACACGGACCACCAGGCTCTGGGAAAACTTCATTATCAAGGGCTGTAGCCAAATCCCTTGAGAATCATAAAGATATCTTAGCACACATAGTTTTTGTGCCCTGCTCAAAACTTTCTTTGGAGAAGGTCCCAATAATTCGCCAAGAACTTACAAACCATGTAATGGAAGCTTTAAACCATGCGCCCTCCATCGTAATCTTTGATGATCTTGATAGCATAATTTCAACTTCTGATTCCGAAGGATCTCAGCCCTCAACGTCTGTTGCTGGACTCTCAGATATTTTGGTTAACATCATCGATGAATATAGGGAGAAGAGGCAAAAATCATGTGGATTTGGACCGGTAGCCTTCATAGCTTCCATACAGTCACTGGAGAAACTGCCACAGTCTTTGAGCTCTTCAGGACGCTTTGACTTCCACATACAGTTGCCAGCTCCTGCAGCTTCAGAGCGTAAAGCTATGTTGAAGCATGAAATTGAAAGGCGTCACTTGCAATGTGGTGAAGACATCCTACTGGATGTGGCTGTCAAATGTGATGGTTATGATGGCTATGATCTGGAAATATTAGTTGACAGAGCTGTCCATGCTGCTGTTCATCGATTTTTGCCATCAAATGCTGCCAATAATGAGCACGAGAGTCCTGCTTTACTAAGAGAGGATTTCTCCCAGGCAATGCATGGTTTTCTTCCAGTTGCAATGCGTGACATCACAAAATCTGCATCTGATGATGGTCGTTCTGGATGGGATGATGTGGGTGGCCTCGTTGACATCCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCGCAAGCACCATTGAGGTTGAGGTCAAACGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATTGTGGGTGCTGCTGCGGCTGCTTCATCGCTTCGATTCATATCAGTGAAAGGACCAGAGCTGTTGAACAAGTATATTGGTGCTTCTGAACAAGCCGTTAGGGATATATTCTCTAAAGCAGCAGCAGCAGCTCCTTGCTTACTATTTTTTGATGAGTTTGATTCTATTGCTCCTAAGAGAGGGCATGACAATACTGGAGTAACTGATCGTGTCGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTATTTGCTGCTACAAGTAGACCGGATTTACTTGATGCGGCACTGCTGAGACCTGGTAGGTTAGATCGACTTCTTTTCTGTGATTTTCCATCTTGGCATGAGAGATTGGAAATTCTGACTGTTCTTTCTAGAAAGTTACCAATGGCGCATGATATAGATTTGGCCACAGTAGCTAAAATGACTGAGGGATTCAGTGGAGCTGACCTCCAAGCTCTCCTCTCAGATGCACAGCTCGCAGCAGTTCATGAAGTTCTGGACAATTTGGGTGCCTCTGCGCCGGGTAAAGCACCAGTTATTACAGATGCTTTACTGAAGGCCAATGCCTTGAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAAAGGAGACTCTACAGTATCTATGGCCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCTCAGTCAAGGGATGCCAAAGGCAAGAGAGCAACTCTAGCGTGA 2988 0.4244 MRFPLWLHGHTVITFHVTSVFPKKAVVQLMPGTEVAVAPKRRNRLLDSAGDSHLESCDKEQTAKMLLRIQDPGVLCHTRTDVKGVELHMGLTSVAFVHPETAKHFSFNMLQPVSLVPRISKENANISKTNVLKSKGGSTGNEVENGNLTDKKQHRQAVVHLLFSESVAAGHVMLAKSLRLYLRAGLHTWVYLKAYDIIREKSIPSITFSPCQFKLLKQDSSAEKDGLDSHNNHMNGKLLAKSMSGDFVDPIDWSINNEVVAALSDESNCKAEEENANQSQNQKRIKSLVRLWYIAQIEAITSITGVEVNSLVMCSQTLLDFKLNCHNLGDNGRAPLPYNSSENSGKTAEVLFILTFGDEHLHHGKPNAYKVALGKSLKSINIGDLQLFEGMKLGDPVSIHSIEETASQEHISSNVSLLSWMEKPASDIINRMLVLLSLKCGLWFGSCNLPLPGHVLVHGPPGSGKTSLSRAVAKSLENHKDILAHIVFVPCSKLSLEKVPIIRQELTNHVMEALNHAPSIVIFDDLDSIISTSDSEGSQPSTSVAGLSDILVNIIDEYREKRQKSCGFGPVAFIASIQSLEKLPQSLSSSGRFDFHIQLPAPAASERKAMLKHEIERRHLQCGEDILLDVAVKCDGYDGYDLEILVDRAVHAAVHRFLPSNAANNEHESPALLREDFSQAMHGFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMAHDIDLATVAKMTEGFSGADLQALLSDAQLAAVHEVLDNLGASAPGKAPVITDALLKANALKARPSVSEEEKRRLYSIYGQFLDSKRSVAAQSRDAKGKRATLA* 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1825 995 Gene3D - 1 40 - -
Amo14g1825 995 Gene3D - 873 952 - -
Amo14g1825 995 ProSitePatterns AAA-protein family signature. 842 860 IPR003960 GO:0005524|GO:0016887
Amo14g1825 995 Pfam AAA+ lid domain 894 930 IPR041569 -
Amo14g1825 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 681 IPR027417 -
Amo14g1825 995 PANTHER - 1 992 - -
Amo14g1825 995 Gene3D - 703 964 IPR027417 -
Amo14g1825 995 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 930 IPR027417 -
Amo14g1825 995 Pfam ATPase family associated with various cellular activities (AAA) 742 869 IPR003959 GO:0005524|GO:0016887
Amo14g1825 995 Pfam ATPase family associated with various cellular activities (AAA) 455 600 IPR003959 GO:0005524|GO:0016887
Amo14g1825 995 Pfam Peroxisome biogenesis factor 1, N-terminal 2 39 IPR015342 GO:0005524|GO:0005777|GO:0007031
Amo14g1825 995 SUPERFAMILY Cdc48 domain 2-like 1 39 IPR029067 -
Amo14g1825 995 CDD AAA 449 600 - -
Amo14g1825 995 CDD AAA 708 871 - -
Amo14g1825 995 SMART AAA_5 451 603 IPR003593 -
Amo14g1825 995 SMART AAA_5 738 874 IPR003593 -
Amo14g1825 995 Gene3D - 406 602 IPR027417 -
Amo14g1825 995 Gene3D - 603 692 - -
Amo14g1825 995 PANTHER AAA-FAMILY ATPASE 1 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1825 Amo-Chr14 39682302 39691719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1825 736 935 Calmodulin-binding Proteins AT3G56690 39.303 3.28e-37 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1825 14 39682302 39691719 Amo04g0730 04 22674039 22683710 hybridization