Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1821 ATGCTGGGTGGCCTCTACGGCGACCTTCCTCCACCATCCTCGGCGGAGGAAGAAAAACCCACCACCAACTCCACCGTCTGGTCCACCAGCACCAAGATGGCCCCCGCCACCCTCCGCAAACCCGCCACTGTCTCCGCCCCTCCCGTCACCCTCCTCCGATCTCAATCCAAACCAAAACCCCTCCCCACTCCCTCCTCCTCCTCCAAAATCCCCTCAATCCCTGCTGCTCCGGCACTTCCACCGCCGCCGGTTCTCCCCGACGACCCAGCACACCACCAGCCTGCACTCGTCGGCGTCCAGTCGACGGTGATAGAGGAGTACGACCCCGCCAGGCCCAACGACTACGAGGAGTATCGCCGCGAGCGGAAGCGAAAGGCGAGGGAGGCGGAGATGATGCGTGAGCTGGAGCGGCGGCGCCAGGAGGAGGAGGAGAGAGAGAGGAGAGAGAGGGAGGAGAGAGAAAGAGAGAGGGAGCGGGAGCGGGATTACGGCGATTCCAGGTTGAATATTTCCGGCGAGGAAGCGTGGAGGAGGCGTGCTGCCATGAGTAGTGGAGGTGGCAGCGGTGGTGGTGGCGGCGCTGTTCCGCGATCCCCGTCGCCACCAGGGAATTTGGATGGTTTTAGCATTGGGAAGTCGGAGACTGGCGGGTTGGGGCTTGGGGCAGGCGGGCAGATGACGGCGGCGCAGAGGATGATGGCGAAAATGGGGTGGAAGGAAGGACAGGGGCTTGGGAAGCAAGAACAAGGAATCACTACTCCATTGATGGCAAGGAAAACTGATAGAAGAGCTGGTGTTATTGTGAATGCCAGTGAGAACAGTAGTAATAAGCCTGAGAAGAAGGTGAAGAGTGTTAACTTCCATGGGGTTCCTACTAGGGTGCTCCTACTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAACTAGAAGAGGAGGTAGGATCAGAATGTGCCAAGTATGGAACTGTAACTCGGGTTTTGATATTCGAGATAACAGAGCCAAATTTCCCTACTGATGAAGCAGTAAGAATTTTCGTGCAATTTGAGAGATCAGAGGAAACAACCAAAGCTTTAATTGACCTTAATGGTCGGTACTTTGGAGGTAGAGTGGTGCAGGCCTCATTTTATGACGAGGAGAAGTTCGGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGTTTTTCCTGA 1197 0.5606 MLGGLYGDLPPPSSAEEEKPTTNSTVWSTSTKMAPATLRKPATVSAPPVTLLRSQSKPKPLPTPSSSSKIPSIPAAPALPPPPVLPDDPAHHQPALVGVQSTVIEEYDPARPNDYEEYRRERKRKAREAEMMRELERRRQEEEERERREREERERERERERDYGDSRLNISGEEAWRRRAAMSSGGGSGGGGGAVPRSPSPPGNLDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMARKTDRRAGVIVNASENSSNKPEKKVKSVNFHGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALIDLNGRYFGGRVVQASFYDEEKFGKNELAPMPGEIPGFS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1821 398 SUPERFAMILY RNA-binding domain, RBD 294 381 IPR035979 GO:0003676
Amo14g1821 398 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 372 IPR000504 GO:0003723
Amo14g1821 398 SMART rrm2_1 294 375 IPR003954 GO:0003676
Amo14g1821 398 MobiDBLite consensus disorder prediction 74 89 - -
Amo14g1821 398 CDD RRM_UHM_SPF45 291 387 IPR034653 -
Amo14g1821 398 MobiDBLite consensus disorder prediction 48 72 - -
Amo14g1821 398 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 379 IPR000504 GO:0003723
Amo14g1821 398 ProSiteProfiles G-patch domain profile. 225 271 IPR000467 GO:0003676
Amo14g1821 398 SMART G-patch_5 223 269 IPR000467 GO:0003676
Amo14g1821 398 PIRSF SPF45 3 394 IPR040052 GO:0045292
Amo14g1821 398 MobiDBLite consensus disorder prediction 1 224 - -
Amo14g1821 398 MobiDBLite consensus disorder prediction 109 174 - -
Amo14g1821 398 Pfam G-patch domain 228 267 IPR000467 GO:0003676
Amo14g1821 398 Gene3D - 289 387 IPR012677 -
Amo14g1821 398 PANTHER SPLICING FACTOR 45 SPF45 1 389 IPR040052 GO:0045292
Amo14g1821 398 Coils Coil 115 161 - -
Amo14g1821 398 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1821 Amo-Chr14 39552502 39555362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1821 231 266 C2H2 Transcription Factor Family AT5G26610 61.111 1.37e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1821 K12840 - zju:107418861 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1821 14 39552502 39555362 Amo04g0725 04 22587445 22590286 hybridization