Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1803 ATGGCGACGGAGCAAACCAAGTTCAGCGTTATGTGCAGCCTCTTCAACTGGACGCAGCGTGCCAAGTCGCCGGCCAAGAAGCGCGCAAAGTTCCGCAAGTTCCTCGACTCATTCTGCGCCGACCGCAACTTCTTCCCTGCCATTCGCCTCGTCCTCCCCAACCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCAGTCCTCGCCATTTCCCTCATCGACGCCCTCGGCATGTCTCGCGACTCCGAAGACGCCCTTCGCCTCATTAATTGGCGCAAGGGCGGCGCCAAGACCGGCGCCAATGCCGGCAATTTCGCCCTCGTCGCCACCGAGGTACTGCAGCGCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGGTAAATGACTTGCTTGATCAGTTGGCTGCTAGTGAAAACAGGGCCGAGAAGACTCAGGTTCTTTCTACCTTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAGTCCTCAAAGATCTGAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCTGAAGACTTATTTAATGTTACATGCGACTTAAAATTAGTGTGTGAAAAACTAAGGGATCGGAATCAGCGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAGCTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGTGACCGCATTCAAATTCACAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTCCTTGATCATTCAGAATATGCACATGCAATGTCAGAAATCATACAGCAAAACATCTTGGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTTTGGGACAGTTCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGACAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGAGATTCTCCGTAAAGTTGTGAGGCCATTGAAGGGGCGCCTTGAAATTTTAGTACCTAATGGTGGTCTTAATAGTCATTGCTCTTCAGGTGAACCATGTTGGTCATTCATTGCTCATAATGTGGATGAAGTTGAGAAATTTTTCAAAGAAACTATAGAGAACAGAGATGAGGGAATAGTTGTTAAAGACCTCGGTTCTAAATGGGAGCCTAGTGATCGAAGTGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGCGCTGATCTGGATGTGCTTATCATAGGAGGTTATTATGGCTCTGGACGACGTGGAGGGGAGGTTGCTCAGTTCTTGGTGGGCCTTGCTGAGCGTCCATCCCCAAATACACATCCCAAGCGGTTTATCTCCTTCTGTAGAGTTGGTACTGGGCTTTCTGATGATGAGCTTGATGCGTTAGTAACAAAACTAAAACCTTACTTCCGAAAGTATGAATATCCGAAGAAGAGGCCGCCAAGTTTCTATCAAGTAACTAATCATTCAAAAGAAAGGCCTGATGTGTGGGTTGATAGCCCTGAGAAATCGATTATTCTGTCCATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCGTACAGCCTGAGGTTTCCTCGGATTGACAGGGTGAGATATGACAAAGCTTGGTACGAATGCCTTGATGTGCAATCATTCATAGAACTAGTACAGTCCAGCAATGGTACTACTCAGAGGGATACAGAAACCAAGCAGGGTGGCAAATCAAATCGTATAAGGTCCTCCATAAGGGGAGAAAAGAAAATCATGTCCATTGTTCCTTCTCATTTAACTCAGACTGATGTTTCCAGTATCAAGGGAGACTCTCATATATTTTCAAATATGATGTTTTACTTCGTTAATGTGCCTCCATCTCATTCTCTTGAGAGCTTGCACAAAATGATTGCTGAGAATGGGGGAGTTTTCTCGATGAACTTAAATAACTCTGTCACTCATCGTGTGGCGGCAGAGAGCAAGGGGTTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCACTACAGTTGGATATTAGATTGCTGCTCACAAAAGAAGCTTATCCCCTTACAGCCAAAGTACTTCCTCTTCCTATCTGAAGTAACAAGGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCTGACTCTTACTACATGTATATTGATCTTGGAGAGTTCAAACAGCTCTTAAACACTATTAATAGGTCAGAAGATATCAGTACTATTGATCATTACAGCAAAAAATACTGCCCAAAGGATGAGTGGTCTGTCTTTATTGGATGCTCCATATATTTCCACACTGCAATACCATCAGTGAAAGGGGAATGGGAAGTTCTATTGCAACTTGCTTTGAGAAGATTCAAGGTTGAAGTTCTCATGGGCGGTGGTAGAGTTACTGATAAACTTACTTGTGCAACCCATTTAGTTGTCTTGTCAGTTCCAGGATATGATGCCGAATTTGATGAGCTACAGAGATGTTTTACTTCAGTGGATAGGAGGTTTCTCCAGAGCAAGAGGTTGCATATAATAAAATCCCATTGGTTTGAAGATTGTCTGGACAATAACAAAAGATTACCAGAAGAAAGTTACAGCTTGAGGCCCTCTGTAATAGCAGAGTCAACATCTGAAAATGGTGAAAATGACACCTTAGAGTCTCACTTTGGTGGAGACAATGTACAAGACCAGAATGTACCCTCTGAAAAGGAAAATAGACAGAGAAGTGCAAAAGCTGCTCATGAACACAGTTTGGCCACGGTGTCCCATGAGAATGTTGGCCCAAGGAAGAGAGGAAGACCTGCAGGGAGAGGTGTTAAAAATGTTAAGATGGCTGGCAACAAAGCCCAAAGAGCACGGCCACGCACTGTGAGAAAGCGTGCGAAAATAAGCGAATATGAATCAGACAAAAGTGATTCTCATGACAATGAACCAGAAGAGCAGGAGAATGACACCGGAGAAGCAAGTTTTGATATTTACAATAGACATTTGGAACCTCAGGAGGTCGAGCAACAGGCCAATGTCCAAGTTGCCGAAACAGAAGAAAGTTCTGAACCAAACAGGGCAGTGCATGATTTGAGGAATAGTAGTGAGAGTGAAAGAATGTATGTTCCAGAAATAAAAATGGCAGATAGGACCAATGACCAAAACAGTGAATTGGCTAATGAGATTGAAAATCGGGCTGATCCCATGTTATTTGACAAGATTCCCGGCCTTGCTACCGCCAAGAAAGTTGAGGACACTAAGCATTGTGATCTAAAAGAAGAGAGGCCAGCTGCAGCAGCAGAAAGCAGTAGCACCAATGCTGCTGAACCTACAATCACTAAGAAAAAGAAAGTTAGCTACAAGGACGTTGCCAATGACCTGCTCAAAGATTGGTAG 3504 0.4375 MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERGSYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGTASGGLTIKEVNDLLDQLAASENRAEKTQVLSTFIQKTNAQEMKWIIMIVLKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSHCSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVVKDLGSKWEPSDRSGKWLKLKPEYIQAGADLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVQSSNGTTQRDTETKQGGKSNRIRSSIRGEKKIMSIVPSHLTQTDVSSIKGDSHIFSNMMFYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHRVAAESKGFKFEAAKRHGDIIHYSWILDCCSQKKLIPLQPKYFLFLSEVTRKKLQEEIDEFSDSYYMYIDLGEFKQLLNTINRSEDISTIDHYSKKYCPKDEWSVFIGCSIYFHTAIPSVKGEWEVLLQLALRRFKVEVLMGGGRVTDKLTCATHLVVLSVPGYDAEFDELQRCFTSVDRRFLQSKRLHIIKSHWFEDCLDNNKRLPEESYSLRPSVIAESTSENGENDTLESHFGGDNVQDQNVPSEKENRQRSAKAAHEHSLATVSHENVGPRKRGRPAGRGVKNVKMAGNKAQRARPRTVRKRAKISEYESDKSDSHDNEPEEQENDTGEASFDIYNRHLEPQEVEQQANVQVAETEESSEPNRAVHDLRNSSESERMYVPEIKMADRTNDQNSELANEIENRADPMLFDKIPGLATAKKVEDTKHCDLKEERPAAAAESSSTNAAEPTITKKKKVSYKDVANDLLKDW* 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1803 1167 MobiDBLite consensus disorder prediction 1129 1152 - -
Amo14g1803 1167 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Amo14g1803 1167 MobiDBLite consensus disorder prediction 915 939 - -
Amo14g1803 1167 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Amo14g1803 1167 ProSiteProfiles BRCT domain profile. 838 908 IPR001357 -
Amo14g1803 1167 SUPERFAMILY Nucleic acid-binding proteins 451 601 IPR012340 -
Amo14g1803 1167 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Amo14g1803 1167 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Amo14g1803 1167 MobiDBLite consensus disorder prediction 940 954 - -
Amo14g1803 1167 Gene3D BRCT domain 664 778 IPR036420 -
Amo14g1803 1167 CDD BRCT_DNA_ligase_IV_rpt1 654 740 - -
Amo14g1803 1167 CDD OBF_DNA_ligase_IV 449 593 - -
Amo14g1803 1167 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo14g1803 1167 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Amo14g1803 1167 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g1803 1167 PANTHER DNA LIGASE 4 3 908 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Amo14g1803 1167 MobiDBLite consensus disorder prediction 915 1090 - -
Amo14g1803 1167 MobiDBLite consensus disorder prediction 1000 1018 - -
Amo14g1803 1167 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 8 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g1803 1167 MobiDBLite consensus disorder prediction 1058 1082 - -
Amo14g1803 1167 Coils Coil 127 150 - -
Amo14g1803 1167 MobiDBLite consensus disorder prediction 1041 1057 - -
Amo14g1803 1167 Pfam BRCT domain, a BRCA1 C-terminus domain 652 735 IPR001357 -
Amo14g1803 1167 Gene3D BRCT domain 797 908 IPR036420 -
Amo14g1803 1167 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Amo14g1803 1167 Pfam DNA ligase N terminus 8 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Amo14g1803 1167 Gene3D - 445 606 IPR012340 -
Amo14g1803 1167 SMART BRCT_7 652 728 IPR001357 -
Amo14g1803 1167 SMART BRCT_7 805 898 IPR001357 -
Amo14g1803 1167 ProSiteProfiles BRCT domain profile. 650 738 IPR001357 -
Amo14g1803 1167 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Amo14g1803 1167 SUPERFAMILY BRCT domain 790 910 IPR036420 -
Amo14g1803 1167 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Amo14g1803 1167 SUPERFAMILY BRCT domain 654 739 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1803 Amo-Chr14 37986273 38000222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1803 215 602 Core DNA Replication Machinery Family AT1G08130 28.713 3.88e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1803 K10777 - gmx:100816002 1795.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1803 14 37986273 38000222 Amo04g0703 04 21176438 21186804 hybridization