Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1707 ATGTCAAGCACAGATGGTGCAGGCGCAGGGGTTTATGCAACTATCGTCGTTGTTGTAATAATGGTGAAACTAGCTATTGTAGTTTGTGTATGCCGAGAAAGGATGAAGAATAATAAAGACGGATCGGTTCGTCCAGCCATACCGTTCTTGACAATCACAATTGATAAGTTCTTGAATGATATTGAAAGGGAGAAGCCAATTAGATTCACCGATCAGCAGCTACGCATTGCGACCGATAACTACTCRAATTTGTTGGGATCAGGAGGTTTCGGCRCAGTTTACAAAGGAATCTTCAGCAACGGCACAATTGTGGCTGTGAAGGTGTTGTATGGAAGTTCTGACAAAAGAATTCAAGAACAGTTTATGGCAGAAATGGGAACACTTGGTAGGATCCACCATTTCAATCTTGTTCGGCTGTACGGATTTTGTTTCGAAAGGAACTTGATAGCGTTGGTTTATGAGTACATGGGAAATGGATCTCTTGACAGGTATTTGTTTAGAGAAATCAAGGCTTTGGAGTTTGAAAAGCTTCATGAGATTGCGGTTGGAACAGCAAGAGGCATCGCTTATTTACATGAAGAGTGCCAACACAGAATAATCCATTATGATATAAAACCAGGGAATATTCTCTTGGACAAGAATTTCAATCCAAAAGTCGCCGATTTTGGTTTGGCCAAGCTTTGTAACAGGGATAATACTCATATATCCATGACTGGAGGCAGGGGAACTCCCGGTTACGCTGCACCGGAGCTTTGGATGCCATTTCCTGTCACTCACAAGTGCGATGTTTACAGCTTTGGCATGTTGTTATTGGAAATCATAGGCAGGAGAAGAAATGTAGACACGAATCTTTCAGAAAGTCAGGAATGGTTTCCAATCTGGGTTTGGAAGAAATACGATGGCGGAGAATTAGGAAATTCGAAAATAGTGGCGGAAATGGAAGAGAAACAAAAGGAAATGACAATGAGAATGGTCAGGGTGGCTCTATGGTGTGTCCAATATAGGCCAGAACTAAGGCCTAATATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAGATGAGATTCCAGAACCATTGAATCCATTTCAACACTTGATTGGAGGTACTTTTGTTGCTCATCCAGTRCAAGTTTCACAGGGCTATACTGAAAGCAGTAGCATCTATACTGGCTCTTCTATTATGGTAACTGACTCAAGCATTGTGTGTGCAACTCCTATTATGCACAAGTATGAGATTGAATTAGCCTCTAGCAGAGCTGATGACTCATGCAGGACACATTAA 1281 0.4161 MSSTDGAGAGVYATIVVVVIMVKLAIVVCVCRERMKNNKDGSVRPAIPFLTITIDKFLNDIEREKPIRFTDQQLRIATDNYSNLLGSGGFGXVYKGIFSNGTIVAVKVLYGSSDKRIQEQFMAEMGTLGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFREIKALEFEKLHEIAVGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFNPKVADFGLAKLCNRDNTHISMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLLEIIGRRRNVDTNLSESQEWFPIWVWKKYDGGELGNSKIVAEMEEKQKEMTMRMVRVALWCVQYRPELRPNMSVVVKMLEGSDEIPEPLNPFQHLIGGTFVAHPVQVSQGYTESSSIYTGSSIMVTDSSIVCATPIMHKYEIELASSRADDSCRTH* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1707 426 SMART serkin_6 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g1707 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Amo14g1707 426 Gene3D Phosphorylase Kinase; domain 1 54 155 - -
Amo14g1707 426 Pfam Protein tyrosine and serine/threonine kinase 83 349 IPR001245 GO:0004672|GO:0006468
Amo14g1707 426 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Amo14g1707 426 ProSiteProfiles Protein kinase domain profile. 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo14g1707 426 CDD STKc_IRAK 85 351 - -
Amo14g1707 426 Gene3D Transferase(Phosphotransferase) domain 1 156 357 - -
Amo14g1707 426 PANTHER PUTATIVE-RELATED 9 416 - -
Amo14g1707 426 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 416 IPR045874 GO:0004672
Amo14g1707 426 SUPERFAMILY Protein kinase-like (PK-like) 64 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1707 Amo-Chr14 33302572 33304224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g1707 68 362 Receptor kinase-like Gene Family AT5G38280 42.763 1.63e-76 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Amo14g1707 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1707 - - gmx:100816921 645.58